Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2459 170 4e-40 seq32142 161 2e-37 >seq2459 Length=3073 Score = 170 bits (188), Expect = 4e-40 Identities = 143/174 (82%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204 ||| ||| | | ||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 3073 GGATGTGTGATCCTATTTTGTTGGTTTCTAGGATTACCGTAATGATTAATAGGGTCAGTT 3014 Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264 ||||| | ||||| |||||||||||||||||||||||||| || ||||| |||||| Sbjct 3013 GGGGGCATTTGTATTACATTGTCAGAGGTGAAATTCTTGGATTGATGTAAGACAAACTAC 2954 Query 265 TGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| | ||||||||| |||||| |||| ||||||| |||| ||| Sbjct 2953 TGCGAAAGCATCTGCCAAGGATGACTTCATTGATCA-AGAACGAAGGTTAAGGG 2901 >seq32142 Length=9645 Score = 161 bits (178), Expect = 2e-37 Identities = 160/203 (79%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 117 GAATACATTAGCATGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAG 175 ||||||||||||||||||||||| ||| || | || | |||||||||||||||| | Sbjct 2462 GAATACATTAGCATGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC 2403 Query 176 GACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 ||| ||||||||||| ||||| ||| |||||| | |||| | ||||||||| | Sbjct 2402 -ACCAGGGTAATGATTAACAGGGACAGTTGGGGGTATTCTTATTTCAGCGTCAGAGGTAA 2344 Query 236 AATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 ||||||||||| | |||| | || |||||||| || |||||||||||||| ||| Sbjct 2343 AATTCTTGGATCGCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTTATT 2284 Query 296 AATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| Sbjct 2283 AATCA-AGAACGAAAGTTAGGGG 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914862034944