Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2459 302 2e-79 seq12731 77.0 1e-11 >seq2459 Length=3073 Score = 302 bits (334), Expect = 2e-79 Identities = 252/306 (82%), Gaps = 3/306 (1%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||| ||| ||||| | | ||| | ||||||||| ||||||||||||||||||||||| Sbjct 818 GGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 759 Query 441 TCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | ||||||| ||||||||| |||||| | || ||||||||||||| | | || || Sbjct 758 TGCTTGCGAGTATTTGGGTGTTGAAACCCTTATGCATAATGAAAGTGAATGTAAATGAGA 699 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAG 557 | | |||||| ||| |||| ||||||| || || || |||||||||| Sbjct 698 TCTGTAAAAGGTGCATCATTGACCAGTCCTGATTATTTATATGAAGGTACTGAGTAAGAG 639 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 CAAGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 579 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||| Sbjct 578 ACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAG 519 Query 678 GGGCGA 683 |||||| Sbjct 518 GGGCGA 513 Score = 192 bits (212), Expect = 2e-46 Identities = 149/176 (85%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 1194 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 1135 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 1134 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 1075 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | ||| | ||||||| Sbjct 1074 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACATTTGAAGTTAGACTTG 1020 >seq12731 Length=1372 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||| ||||| | |||||| ||||||||||||||||||||||||||| |||| Sbjct 593 GATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGT 534 Query 604 TGAAG 608 |||| Sbjct 533 CGAAG 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079207894400