Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq36484 179 9e-43 seq27723 158 3e-36 seq31292 131 4e-28 seq946 87.8 5e-15 seq36628 82.4 2e-13 >seq36484 Length=4223 Score = 179 bits (198), Expect = 9e-43 Identities = 177/230 (77%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 51 TGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 110 ||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 3138 TGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAA 3197 Query 111 TTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG 170 ||||||||||||||| || | | |||||||||||||||||| ||| |||| || || | Sbjct 3198 TTTCGCTACCTTAGGGCCATCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAGTG 3257 Query 171 CTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTAT 230 | || ||| | | |||| ||||| |||||||||||| |||| ||||||| Sbjct 3258 C---------GCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTAT 3308 Query 231 ACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 || || | | || ||||||| || ||||||| ||||||||| || Sbjct 3309 ACATCATGTCACCATTTAGCAGAGTCCTAAGTTTTTATTAAACAGTCACA 3358 >seq27723 Length=2493 Score = 158 bits (174), Expect = 3e-36 Identities = 157/205 (77%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| ||||||||||||||||||||||||||||||||||||||||||| || | | | Sbjct 272 CCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGGCCATCAGAG 331 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAAT 195 ||||||||||||||||| ||| |||| || || || || ||| | | | Sbjct 332 TTACGGCCGCCGTTTACTGGGACTTCCATTTAGTGC---------GCAAACATCTCCTTT 382 Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255 ||| ||||| |||||||||||| |||| ||||||||| || | | || ||||||| Sbjct 383 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTCACCATTTAGCAGAGT 442 Query 256 GCTGTGTTTTTAATAAACAGTCGCA 280 || ||||||| | ||||||| || Sbjct 443 CCTAAGTTTTTATTGAACAGTCACA 467 >seq31292 Length=580 Score = 131 bits (144), Expect = 4e-28 Identities = 121/155 (78%), Gaps = 9/155 (6%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TCGTTACACCATTCATGTAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 258 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC 187 ||| | | ||||||||||||||| ||| |||| || | || || ||| Sbjct 257 CGTCAGAGCTACGGCCGCCGTTTAGTGGGACTTCCATTTAATGC---------GCAAACA 207 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222 | | |||| ||||| |||||||||||| |||| Sbjct 206 TCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCA 172 >seq946 Length=250 Score = 87.8 bits (96), Expect = 5e-15 Identities = 92/120 (77%), Gaps = 11/120 (9%) Strand=Plus/Minus Query 104 CAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA 163 ||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||| | Sbjct 250 CAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCA 191 Query 164 TCAAGAGCTTCGCGTTAGCTAACCCCATCA-ATTAACCTTCCGGCACCGGGCAGGCGTCA 222 | | || || ||| | ||| |||| ||||| |||||||||||| |||| Sbjct 190 TTTAATGC---------GCAAACATC-TCATTTTAATCTTCCAGCACCGGGCAGGTGTCA 141 >seq36628 Length=12597 Score = 82.4 bits (90), Expect = 2e-13 Identities = 105/146 (72%), Gaps = 9/146 (6%) Strand=Plus/Minus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 |||||||||||||||||| ||| |||| || | || || ||| | | Sbjct 5187 GTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGC---------GCAAACATCTCCTT 5137 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||| | ||| |||||||||||| |||| ||||||||| || || | || |||||| Sbjct 5136 TTAATCGTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGAG 5077 Query 255 TGCTGTGTTTTTAATAAACAGTCGCA 280 | || ||||||| |||||||||||| Sbjct 5076 TCCTAAGTTTTTATTAAACAGTCGCA 5051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260334411776