Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq36484 208 2e-51 seq27723 192 1e-46 seq31292 145 2e-32 seq946 107 4e-21 seq36628 100 6e-19 seq33934 75.2 2e-11 >seq36484 Length=4223 Score = 208 bits (230), Expect = 2e-51 Identities = 246/334 (74%), Gaps = 17/334 (5%) Strand=Plus/Plus Query 37 GTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 96 || ||||| ||||||| | | ||||||| || ||| ||| |||||||||||||||| Sbjct 3132 GTATATTG--GAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCG 3189 Query 97 ACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||||||||||||||||| || | | ||||||||||||||||||||||| || Sbjct 3190 ACAAGGAATTTCGCTACCTTAGGGCCATCAGAGTTACGGCCGCCGTTTACTGGGACT--- 3246 Query 157 GTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCA 216 | | | | ||| | |||| ||| |||| |||||||||||||||||| |||| Sbjct 3247 ------TCCATTTAGTGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCA 3300 Query 217 GCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTG 276 | |||||||||| | | | | |||||||| ||| |||||| ||||||||| | Sbjct 3301 GACCCTATACATCATGTCACCATTTAGCAGAGTCCTAAGTTTTTATTAAACAGTCACAAC 3360 Query 277 GGCCTATTCTCTGCGGCC------TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGG 330 |||||| | || || | ||| | ||| || || |||| ||||||| Sbjct 3361 CCCCTATTTTGTGACACCTAATTATAAAATAAATAGGTACTTTTTATCCCAAAGTTACAA 3420 Query 331 GGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||||||||| | ||||||||| Sbjct 3421 AGTCATTTTGCCGAGTTCCTTCAATATAGTTCTC 3454 >seq27723 Length=2493 Score = 192 bits (212), Expect = 1e-46 Identities = 222/301 (74%), Gaps = 15/301 (5%) Strand=Plus/Plus Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129 || ||| ||| ||||||||||||||||||||||||||||||||||||||| || | | || Sbjct 272 CCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGGCCATCAGAG 331 Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCT 189 ||||||||||||||||||||| || | | | | ||| | |||| ||| | Sbjct 332 TTACGGCCGCCGTTTACTGGGACT---------TCCATTTAGTGCGCAAACATCTCCTTT 382 Query 190 TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAA 249 ||| |||||||||||||||||| ||||| |||||||||| | | | | |||||||| Sbjct 383 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTCACCATTTAGCAGAGT 442 Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TGTCATAGA 303 ||| |||||| | ||||||| | |||||| | || || | ||| | Sbjct 443 CCTAAGTTTTTATTGAACAGTCACAACCCCCTATTTTGTGACACCTAATTATAAAATAAA 502 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 ||| || || |||| ||||||| |||||||||||||||||||| | |||||||| Sbjct 503 TAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAGTTCT 562 Query 364 C 364 | Sbjct 563 C 563 >seq31292 Length=580 Score = 145 bits (160), Expect = 2e-32 Identities = 126/158 (80%), Gaps = 9/158 (6%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TCGTTACACCATTCATGTAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 258 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||| | || ||||||||||||||| |||| || | | | | ||| | |||| Sbjct 257 CGTCAGAGCTACGGCCGCCGTTTAGTGGGACT---------TCCATTTAATGCGCAAACA 207 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCT 219 ||| |||| |||||||||||||||||| ||||||| Sbjct 206 TCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGCT 169 >seq946 Length=250 Score = 107 bits (118), Expect = 4e-21 Identities = 96/122 (79%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 98 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAG 157 ||||||||||||||||||||||||||| | ||||||||||||||||||||||| || Sbjct 250 CAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACT---- 195 Query 158 TTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAG 217 | | | | ||| | |||| || |||| |||||||||||||||||| ||||| Sbjct 194 -----TCCATTTAATGCGCAAACATCTCATTTTAATCTTCCAGCACCGGGCAGGTGTCAG 140 Query 218 CT 219 || Sbjct 139 CT 138 >seq36628 Length=12597 Score = 100 bits (110), Expect = 6e-19 Identities = 109/146 (75%), Gaps = 9/146 (6%) Strand=Plus/Minus Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||||||||||||||||| ||| || | ||| | |||| ||| Sbjct 5188 AGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCG---------CAAACATCTCCT 5138 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 |||| | |||||||||||||||| ||||| |||||||||| | || | | |||||||| Sbjct 5137 TTTAATCGTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGA 5078 Query 248 AACCTGTGTTTTTGGTAAACAGTCGC 273 ||| |||||| ||||||||||| Sbjct 5077 GTCCTAAGTTTTTATTAAACAGTCGC 5052 >seq33934 Length=22672 Score = 75.2 bits (82), Expect = 2e-11 Identities = 106/147 (72%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 218 CTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGG 277 |||||||||||| | || | | |||||||| ||| |||||| ||||||||||| Sbjct 15295 CTCCTATACATCATGTTACCATTTAGCAGAGTCCTAAGTTTTTATTAAACAGTCGCAACC 15236 Query 278 GCCTATTCTCTGCGGCCT-GT-----CATAGACAGGCACCCCTTCTCCCTAAGTTACGGG 331 |||||| | || ||| || ||| | ||| || || |||| ||||||| Sbjct 15235 CCCTATTTTGTGACACCTAGTTATAAAATAAATAGGTACTTTTTATCCCGAAGTTACAAA 15176 Query 332 GTCATTTTGCCGAGTTCCTTAACAATA 358 |||||||||||||||||||| ||||| Sbjct 15175 GTCATTTTGCCGAGTTCCTT--CAATA 15151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062007676928