Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq36330 105 2e-20 seq733 89.7 2e-15 seq13617 84.2 7e-14 >seq36330 Length=13285 Score = 105 bits (116), Expect = 2e-20 Identities = 83/99 (84%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAG---CATGTG 63 |||||| |||||| ||||||||||||||||| | |||||||||||||| |||||| Sbjct 9513 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGGAGCATGTG 9454 Query 64 GTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102 ||||||||||| ||||| ||||||||||||| |||| Sbjct 9453 GTTTAATTCGATAATACGCGCAGAACCTTACCAACTCTT 9415 >seq733 Length=214 Score = 89.7 bits (98), Expect = 2e-15 Identities = 77/97 (79%), Gaps = 10/97 (10%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct 167 CGCAAGATTGAAATTCAAAGGAATTGAC----------ACAAGCGGTGGAGCATGTGGTT 118 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||| | ||||||||| ||| ||||| Sbjct 117 TAATTCGATAATACGTGCAGAACCTTATCAACTCTTG 81 >seq13617 Length=276 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||| | ||||||| |||||||||||||||| |||| ||| | |||||| |||| ||| Sbjct 79 ACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGGTTGGTTAAATCCCTTAAC 138 Query 216 GAGCGCAACCC 226 ||||||||||| Sbjct 139 GAGCGCAACCC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503444602880