Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2459 322 8e-86 seq36168 131 3e-28 seq23634 102 1e-19 seq26050 98.7 2e-18 seq17671 98.7 2e-18 >seq2459 Length=3073 Score = 322 bits (356), Expect = 8e-86 Identities = 226/258 (88%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2400 TACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2459 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||| ||||||||| || | | |||||||||||||||||||| Sbjct 2460 ACCTGTTATTGCCTCCAACTTCCATCAACTAAACGTTGATAGTCCCTCTAAGAAGCCAAT 2519 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || ||| | | |||||||||||| ||||||||||||||||||||||||| Sbjct 2520 AGCCAGCCGTAGCCAGCTAGACTATTTAGCAGGAGAAGGTCTCGTTCGTTATCGGAATTA 2579 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 2580 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAAATCAAGA 2639 Query 241 AAGAGCTATCAATCTGTC 258 || ||||||||||||||| Sbjct 2640 AAAAGCTATCAATCTGTC 2657 >seq36168 Length=4891 Score = 131 bits (144), Expect = 3e-28 Identities = 105/123 (85%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 11 CTCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 143 CTCCGATCAGTGTAGCGCGCGTGCGGCCCAGAACAGCTAAGGGCATCACAGACCTGTTAT 202 Query 70 TGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAA 126 | ||| |||||| |||| | || | |||| ||||||||||||||| ||| ||| | Sbjct 203 TATCTCCAACTTCTTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTA 262 Query 127 CCA 129 ||| Sbjct 263 CCA 265 Score = 127 bits (140), Expect = 3e-27 Identities = 88/102 (86%), Gaps = 11/102 (11%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 144 AGGTCTCGTTCGTTAACGGGATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 85 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||||||| |||||||||| Sbjct 84 GCACC-----------AATCAAGAAAGAGCTCTCAATCTGTC 54 >seq23634 Length=12090 Score = 102 bits (112), Expect = 1e-19 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 29 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 |||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| Sbjct 9228 CGTGCGGCCCAGAACATCTAAGGGCATCACGGACCTGTTATTGCCTCCAGCTTCCTATGG 9169 Query 89 CTG-GAAGCCAATAGTCCCTCTAAGAAG 115 || | |||| | ||||||||||||| Sbjct 9168 TTGATTAACCAAAAATCCCTCTAAGAAG 9141 >seq26050 Length=2022 Score = 98.7 bits (108), Expect = 2e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT 86 |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || Sbjct 967 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACATGTTATTGCCTCCAACTTCCTTT 1026 Query 87 GG 88 || Sbjct 1027 GG 1028 >seq17671 Length=14204 Score = 98.7 bits (108), Expect = 2e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT 86 |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || Sbjct 967 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACATGTTATTGCCTCCAACTTCCTTT 1026 Query 87 GG 88 || Sbjct 1027 GG 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796514952768