Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq36476 361 9e-98 seq7434 318 1e-84 >seq36476 Length=27065 Score = 361 bits (400), Expect = 9e-98 Identities = 238/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct 18493 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGCTCTAAACCCAGCTCATGTTCCCTAT 18434 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||| || ||| |||| ||||| |||||||||||||||||| Sbjct 18433 TAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGAC 18374 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 18373 ATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACATGCCAGTTATCCC 18314 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||| |||| |||| | ||||| | | |||||||||||||||||| Sbjct 18313 TGTGGTAACTTTTCTGACACCATTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGC 18254 Query 272 CACACTTTCATGGTTTGTATTCA 294 ||| |||||| |||||||||||| Sbjct 18253 CACGCTTTCACGGTTTGTATTCA 18231 >seq7434 Length=235 Score = 318 bits (352), Expect = 1e-84 Identities = 200/216 (93%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 220 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 161 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| |||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 160 TTAGCGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 101 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 100 CATCGAAGAATCAAAAAGCAGCGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 41 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||| |||||||||| | ||||| Sbjct 40 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854084487168