Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq27918 114 5e-23 seq28675 84.2 8e-14 >seq27918 Length=2478 Score = 114 bits (126), Expect = 5e-23 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 |||||| ||| ||||||||||| | ||||||||| ||||||||| |||| ||||| || Sbjct 2469 ATTTCGCGGAAAACCAGCTATCTCTGAGTTTGATTAGCCTTTCACTCCTAACCACAAATC 2410 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 ||| || | ||| | || || ||| ||||| ||||||| || ||||| |||| Sbjct 2409 ATCTCCATATTTTGCCACATATGTGAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCA 2350 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | ||| ||||| ||||||||| | |||||||||| Sbjct 2349 ATCTGTTCATGGTTAGATCACTCAGTTTCGGGTCTT 2314 >seq28675 Length=6473 Score = 84.2 bits (92), Expect = 8e-14 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 ||| || ||| ||||||||||| | ||||||||| ||||||||| |||| ||||| || Sbjct 4448 ATTCCGCGGAAAACCAGCTATCTCTGAGTTTGATTAGCCTTTCACTCCTAACCACAAATC 4389 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 ||| || | ||| | || | ||| ||||| ||||||| | || ||||| | |||| Sbjct 4388 ATCTCCATATTTTGCCACACATGTGAGTTCGATCCTCCAAACAGTTTTACCTGTTTTTCA 4329 Query 272 ACCT 275 | || Sbjct 4328 ATCT 4325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816928796672