Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2459 367 2e-99 seq7158 141 2e-31 seq36168 120 6e-25 seq26050 96.9 7e-18 seq17671 96.9 7e-18 seq23634 93.3 8e-17 >seq2459 Length=3073 Score = 367 bits (406), Expect = 2e-99 Identities = 268/310 (86%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||||||||| | || ||| ||| || |||||||||| Sbjct 2566 GAACGAGACCTTCTCCTGCTAAATAGTCTAGCTGGCTACGGCTGGCTATTGGCTTCTTAG 2507 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||| | | || |||||||||| |||||||||||||||||||||||||||| Sbjct 2506 AGGGACTATCAACGTTTAGTTGATGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTT 2447 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || Sbjct 2446 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCACCTTATCC 2387 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 2386 GAAAGGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTGCAATTATT 2327 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 2326 GCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTCCCT 2267 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 2266 GCCCTTTGTA 2257 >seq7158 Length=225 Score = 141 bits (156), Expect = 2e-31 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 ||||||||||||||| |||||||| | |||||| || |||||||||||||| Sbjct 1 CGCGCGCTACACTGATGCGTTCAACGAGTATACAACCTTGATCGATAGGTCTGGGTAATC 60 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||| || |||||| |||||||| |||||||| | |||| |||||||||| Sbjct 61 TTGTGAATGCGCATCGTGCCAGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAAT 120 Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| ||| ||||||||| || |||||||||||||||||||||||| Sbjct 121 TCCTAGTAAACGCAAGTCATCAGCTGGCATTGATTACGTCCCTGCCCTTTGTA 173 >seq36168 Length=4891 Score = 120 bits (132), Expect = 6e-25 Identities = 88/102 (86%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | |||||| ||| ||||||||||||| Sbjct 250 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAAGAAGTTGGAGATAATAACAGGTCTG 191 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||| ||||||||||||||||||||||||||||| Sbjct 190 TGATGCCCTTAGCTGTTCTGGGCCGCACGCGCGCTACACTGA 149 >seq26050 Length=2022 Score = 96.9 bits (106), Expect = 7e-18 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153 ||| || | ||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1032 CAAACCAAAGGAAGTTGGAGGCAATAACATGTCTGTGATGCCCTTAGATGTTCTGGGCCG 973 Query 154 CACGCG 159 |||||| Sbjct 972 CACGCG 967 >seq17671 Length=14204 Score = 96.9 bits (106), Expect = 7e-18 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 94 CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCG 153 ||| || | ||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1032 CAAACCAAAGGAAGTTGGAGGCAATAACATGTCTGTGATGCCCTTAGATGTTCTGGGCCG 973 Query 154 CACGCG 159 |||||| Sbjct 972 CACGCG 967 >seq23634 Length=12090 Score = 93.3 bits (102), Expect = 8e-17 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA--AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||| | | || | | | || ||||| | |||||||||||||||| || Sbjct 9141 CTTCTTAGAGGGATTTTTGGTTAATCAACCATAGGAAGCTGGAGGCAATAACAGGTCCGT 9200 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACG 157 |||||||||||||||||||||||||||| Sbjct 9201 GATGCCCTTAGATGTTCTGGGCCGCACG 9228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946850217984