Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq27918 113 2e-22 seq28675 84.2 7e-14 >seq27918 Length=2478 Score = 113 bits (124), Expect = 2e-22 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 2315 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 2374 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 2375 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 2434 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 || |||||| || |||||||||| || ||||| ||||| Sbjct 2435 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATT 2474 >seq28675 Length=6473 Score = 84.2 bits (92), Expect = 7e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||| ||||| ||| ||| | ||||| || ||||| ||||| |||| |||||| Sbjct 4350 TGGAGGATCGAACTCACATGTGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAA 4409 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 |||||| |||||| || |||||||||| || || || ||||| | |||| || Sbjct 4410 GGCTAATCAAACTCAGAGATAGCTGGTTTTCCGCGGAATCTATTGAAGTAGAGC 4463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688976064512