Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq36476 136 1e-29 seq33704 127 7e-27 seq27532 122 3e-25 seq16124 111 5e-22 seq21450 107 6e-21 >seq36476 Length=27065 Score = 136 bits (150), Expect = 1e-29 Identities = 98/113 (87%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 18198 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 18139 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 |||||||||||||| |||||||||||||| |||||||||| ||||| || || Sbjct 18138 ATTTAACAGATGTGCTGCCCCAGCCAAACTTCCCACCTGACGATGTCTTCCAC 18086 >seq33704 Length=6393 Score = 127 bits (140), Expect = 7e-27 Identities = 81/88 (92%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1813 CTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTT 1872 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCC 336 |||||||||||| |||||||||| || Sbjct 1873 TCCCCGCTGATTATTCCAAGCCCGTGCC 1900 >seq27532 Length=4690 Score = 122 bits (134), Expect = 3e-25 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 4550 CGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACA 4491 Query 373 GTGGGAATCTCGTTAATCCATT 394 ||||||||||| |||||||||| Sbjct 4490 GTGGGAATCTCATTAATCCATT 4469 Score = 86.0 bits (94), Expect = 2e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4379 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 4330 >seq16124 Length=2717 Score = 111 bits (122), Expect = 5e-22 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 || |||||| ||||||||||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 1055 CTGCACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTTAAGCTCAACAGGGTCTGCTT 996 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCC 336 ||||||||||| | |||||||||| || Sbjct 995 TCCCCGCTGATATC-CCAAGCCCGTGCC 969 >seq21450 Length=220 Score = 107 bits (118), Expect = 6e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23 GATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCC 82 ||||||||||||| |||| | |||||||||||||| ||||| ||||||||||||||| Sbjct 220 GATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATCATTTAACAGATGTGCC 161 Query 83 GCCCCAGCCAAACTCCCCA 101 ||||||||||||||||||| Sbjct 160 GCCCCAGCCAAACTCCCCA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634596153344