Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq36484 149 2e-33 seq27723 127 7e-27 seq31292 125 2e-26 seq946 77.0 1e-11 >seq36484 Length=4223 Score = 149 bits (164), Expect = 2e-33 Identities = 146/193 (76%), Gaps = 19/193 (10%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 3140 GAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATT 3199 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490 ||||||||||||| | | |||||| ||||||||||||||| |||| ||| Sbjct 3200 TCGCTACCTTAGGGCCATCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT------- 3252 Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 | ||| || || |||| |||| |||||||||||||||||| |||| Sbjct 3253 ------------TAGTGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCA 3300 Query 551 GTCCGTATACCTC 563 | || ||||| || Sbjct 3301 GACCCTATACATC 3313 >seq27723 Length=2493 Score = 127 bits (140), Expect = 7e-27 Identities = 141/193 (73%), Gaps = 24/193 (12%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| ||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 254 GAGACAGCGGGGATGTCA-----CCATTCATGCAGGTCGGAACTTACCCGACAAGGAATT 308 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490 ||||||||||||| | | |||||| ||||||||||||||| |||| ||| Sbjct 309 TCGCTACCTTAGGGCCATCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT------- 361 Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 | ||| || || |||| |||| |||||||||||||||||| |||| Sbjct 362 ------------TAGTGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCA 409 Query 551 GTCCGTATACCTC 563 | || ||||| || Sbjct 410 GACCCTATACATC 422 >seq31292 Length=580 Score = 125 bits (138), Expect = 2e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 375 CAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 434 |||| ||| |||||||| |||||| || ||||||||||||||||||||||||||||||| Sbjct 328 CAGCGGGGATGTCGTTACACCATTCATGTAGGTCGGAACTTACCCGACAAGGAATTTCGC 269 Query 435 TACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||| || | || ||| |||||||||| |||| |||| ||| Sbjct 268 TACCTTAGGACCGTCAGAGCTACGGCCGCCGTTTAGTGGGACTTCCATT 220 >seq946 Length=250 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||| || | |||||| ||||||||||||||| |||| | Sbjct 250 CAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCA 191 Query 482 TT 483 || Sbjct 190 TT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701771337728