Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq28756 158 4e-36 seq36463 91.5 4e-16 >seq28756 Length=13985 Score = 158 bits (174), Expect = 4e-36 Identities = 106/117 (91%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TT 447 ||||||| | || || ||||||||| ||||||||||||||||||||||| ||| | | || Sbjct 3555 TACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAATT 3496 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3495 GTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 3439 >seq36463 Length=11205 Score = 91.5 bits (100), Expect = 4e-16 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTT 451 ||||| || || ||||||||| ||||||||||||||||||||||| ||| | | || || Sbjct 10912 ATCAACTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTT 10971 Query 452 ATACTTAGACATGCATG 468 ||||||||||||||||| Sbjct 10972 ATACTTAGACATGCATG 10988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509842239488