Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq32381 95.1 5e-14 seq36603 89.7 2e-12 >seq32381 Length=22889 Score = 95.1 bits (104), Expect = 5e-14 Identities = 129/176 (73%), Gaps = 13/176 (7%) Strand=Plus/Plus Query 122206 CACCATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAGGAGAACGTC---ACCAT 122262 || ||||||| || | ||||||||| | |||| | |||||| | ||| || || Sbjct 17631 CAACATCAAGTTGTCGGACTTTGGCCTCGCCCGCGTCAAGGCCCA---CGTGCAAACTAT 17687 Query 122263 GACCCG---CGCCGGCACGCCGTGC--TGGATGGCGCCCGAGATCATGCGAAACGAGAAG 122317 |||| | | ||||||| |||| ||||||||||||||| | || | ||| ||||| Sbjct 17688 GACCGGAAACTGCGGCACG--GTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG 17745 Query 122318 CACGACGAGAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCAC 122373 || ||||||| ||||||| ||||| ||||||||| |||| |||||||||| Sbjct 17746 TACACGGAGAAGGCCGACGTCTTTTCGTTCGGCATCGTCATCTGGGAGATCGTCAC 17801 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 17/233 (7%) Strand=Plus/Plus Query 222464 CCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGA 222523 |||| ||||||| ||| | ||| | |||| |||| |||| | | | | || | Sbjct 17579 CCATTCTCCACCGAGACTTGAAGAGCCCCAACTTGCTGGTGGACAAGAACTTCAACATCA 17638 Query 222524 AGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG- 222579 || || | |||||||| |||| || |||||| || ||| || ||||| ||| Sbjct 17639 AGTTGTCGGACTTTGGCCTCGCCCGCGTCAAGG---CCCACGTGCAAACTATGAC-CGGA 17694 Query 222580 ---TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACC 222633 ||||||||| | | |||| ||| |||||| | | || ||| || ||||| Sbjct 17695 AACTGCGGCACGGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG---TACACG 17751 Query 222634 GAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGG 222686 |||||||||||||||| |||||||||||| |||| |||||| || |||| || Sbjct 17752 GAGAAGGCCGACGTCTTTTCGTTCGGCATCGTCATCTGGGAGATCGTCACAGG 17804 >seq36603 Length=15643 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| ||||| |||||||||||||| ||| | ||| || ||||| || || | Sbjct 6497 TCTCGTCGCCGTCGAAGTCGGCGTTGTACGGCGAGCAGACGCACTCGTTGAAGCGGAACG 6438 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 | || || ||| | | | |||||||| |||||||||| |||||||||| | Sbjct 6437 T---GCGCCACGGCATCACCTTGACGCGGTGGCTCATGATGGACATCTTGTGGAGCGAAG 6381 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCGA 351281 |||| || ||| | | |||||| || || || ||||| |||||| ||||||||| Sbjct 6380 GCTGCCGGTTGAACAGCACGATGTCTCCGTCCTCCATGTGCCGCTCCACGATGTCGCCGA 6321 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || ||||||||||| | |||| ||| || ||||||||| || || || ||| Sbjct 8577 GCGTTGATGATCTCCTTGAGACGCGGCACGCCGAGCGTCACGTTCATGCTGGCCACACCG 8518 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCG 349192 || |||||||| |||| ||| |||| ||||||| ||||| |||| ||||| | || Sbjct 8517 GCGAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCCGGCTCCGAGATGGACTGGGCACCG 8458 Query 349193 AGGATGCCTACCATCTCGCCGGGC 349216 | ||| || |||||||||| Sbjct 8457 ACAGCGCCCACGGCCTCGCCGGGC 8434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083728768604544