Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4912 201 5e-49 seq656 190 9e-46 seq5971 86.0 3e-14 seq45 84.2 9e-14 >seq4912 Length=2936 Score = 201 bits (222), Expect = 5e-49 Identities = 151/176 (86%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||||||||||| ||| ||||| || ||||||||| ||||| | |||| Sbjct 1851 GCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTT 1909 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| Sbjct 1910 GGTACCCGAAAGATGGTGAACTATGCCTGAGTTGGGTGAAGCCAGGGGAAACTCTGGTGG 1969 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1970 AAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 2025 >seq656 Length=6771 Score = 190 bits (210), Expect = 9e-46 Identities = 126/140 (90%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||| ||||| | |||||| |||||||||||| |||||||||||||| ||||| Sbjct 4192 GATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGATGAACTATGCCTGAGTAGGG 4251 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||| ||||||||||||||| ||||| |||| ||||| ||||||||||||||||| Sbjct 4252 TGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTC 4311 Query 664 AAATTTGGGTATAGGGGCGA 683 ||| |||||||||||||||| Sbjct 4312 AAACTTGGGTATAGGGGCGA 4331 >seq5971 Length=3659 Score = 86.0 bits (94), Expect = 3e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CA 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| | |||| | Sbjct 689 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGAGTGTGGA 630 Query 464 AACCCGTGCGCGTAATGAAAGT 485 | ||| ||||| ||||||||| Sbjct 629 ACCCCCAGCGCGAAATGAAAGT 608 >seq45 Length=22006 Score = 84.2 bits (92), Expect = 9e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 |||||| | || | || |||||||| | |||||||||||||||||| ||||||||||| Sbjct 6214 TGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGCGAGACCGATAG 6155 Query 119 CGCACAAGTAGAGTGATCGAAAGATG 144 || |||||| |||| |||||||| Sbjct 6154 CGAACAAGTGCCGTGAGGGAAAGATG 6129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079826619650