Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 279 4e-70 seq2518 273 2e-68 seq544 221 1e-52 >seq21 Length=30282 Score = 279 bits (308), Expect = 4e-70 Identities = 900/1384 (65%), Gaps = 31/1384 (2%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| ||| || || ||| || |||||||||||| || || | ||| || Sbjct 4037 GAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTC 3978 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || ||||| || || ||||| |||||||| || |||| || ||||| Sbjct 3977 GTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGCGAGTT 3918 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 |||| |||| | | | ||| | || | |||||||||||| || | Sbjct 3917 GCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCACA--GGCCCGAC 3860 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || | ||| |||||| || || | | | || | |||||||| || || | Sbjct 3859 GACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGAGCCCTG 3801 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 ||| | |||||| || ||||||||| | | | ||||| | || ||| | Sbjct 3800 GAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTCCATAGCCGCATA 3741 Query 65734 ATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 || ||||||||||| || | || || || || || ||||| ||||||||| ||| | Sbjct 3740 GTAGATGGTCTCGAAGAT-CTTCTTGTTGAGCTCGCGGGCCTCCTCGCTCTCGAACGCGA 3682 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 ||| |||| || | ||| || || || || || || || |||||||| || || | Sbjct 3681 AGTTCATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGC 3622 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 ||| ||||| | |||||| | || |||||||| |||| ||||| | |||| Sbjct 3621 GCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCA 3562 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 ||||| || | || | || | ||| | ||| || | | | Sbjct 3561 GGTTGCGCGTGATGACCTTGGTGA--CCTCGTAGAGCTTC----------TGGTA--GTC 3516 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 || | | || | ||||||||||||| || || | || || |||||||| || | Sbjct 3515 GAACACG----CCCTCCTCCACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGCACACGG 3460 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | | |||||| || | || ||||| | | ||| ||||| || ||| |||| || | Sbjct 3459 CCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGGATCG 3400 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | ||||| || || ||| || ||| || |||||||| | |||| | || Sbjct 3399 TGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGGGCA 3340 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTAC 66212 ||| ||||| | || | || | ||||||| ||| || | || || | ||| | Sbjct 3339 CGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTGATCGT-C 3281 Query 66213 GTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 | | ||| | || | ||||| | ||| || ||| || || || ||||| Sbjct 3280 TTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCCCCAG 3221 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 ||| | || | || | | || || | ||| ||| | |||| || Sbjct 3220 CACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGCCTCC 3161 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 || | ||| || ||||| || | ||| || |||||||| || ||||| || || ||| Sbjct 3160 ACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCGGTGC 3101 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 ||| ||||||| || ||||||| ||| |||||||| || | ||| || ||||| || Sbjct 3100 AGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTGCCAGGGC 3041 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || ||||||||||||||||||||| | || ||||| || || ||||| |||||||| || Sbjct 3040 TCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGCGGGCC 2981 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 | |||||| || |||| ||| || | || || || || ||| || ||||| | Sbjct 2980 GTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCACGG 2921 Query 66572 ATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGA--CCAATACCACCGGCCGTC 66628 || | | | |||| || || || | ||| ||| | || || ||||| |||||| | Sbjct 2920 AT-GTAGCTATTCGTGGCGCGGATGTTGTG--CATGCTGATGCCGATACCCCCGGCCCAC 2864 Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 || |||||| || || | | || | | ||||| ||||||||||| ||| Sbjct 2863 TTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGC 2804 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 |||| || ||| |||| || ||||| || || ||| |||| || || || Sbjct 2803 ATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTGTC 2744 Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCA 66808 || || |||||||| || | | | |||||| | ||||||||||| | | || | | Sbjct 2743 GGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCTTA 2684 Query 66809 ATGT 66812 |||| Sbjct 2683 ATGT 2680 >seq2518 Length=24447 Score = 273 bits (302), Expect = 2e-68 Identities = 603/895 (67%), Gaps = 43/895 (5%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 22908 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 22967 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 22968 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 23027 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||| ||||| || || Sbjct 23028 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCTGC 23080 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | |||||||| | Sbjct 23081 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAGGTGCAGG 23136 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || |||||||||| || |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 23137 TGCCGGAGGCGCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGG 23196 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 ||||| | |||||||| |||||||||| ||| || ||| || | || | Sbjct 23197 TGTACTCGCTGCTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGC 23256 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC- 61461 ||||| |||||||| ||| || ||| ||||||| | ||||| |||| ||| | Sbjct 23257 GAGCCATTGAGACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 23316 Query 61462 ACCAGTACAACGG----CTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 ||| | ||| | | | || || ||||||| || || | || ||||| Sbjct 23317 ACCCG-----CGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGG 23371 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | || ||| || ||||| | | ||||| ||| | ||||| || || || ||||| Sbjct 23372 CATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCC 23431 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG- 61636 ||||||| |||| || ||| |||| ||||| ||||||||||| || || | Sbjct 23432 TGGTCTGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGC 23491 Query 61637 CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 ||| | || || || | | |||||||| | | ||||| || ||| || Sbjct 23492 CTGCCTCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGA 23545 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 ||| || | || || || || ||||| || || || || ||| | |||| || Sbjct 23546 GATCGTGCACGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCCCTGCCTGTGGA 23605 Query 61755 ACTCATCGGCATGAA-TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 || ||||||||||| | || | || |||| ||||| ||||| || || |||||||| | Sbjct 23606 GCTGATCGGCATGAACTCGTCG-CTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCC 23664 Query 61814 TGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGG 61873 || || | |||| || | |||||| || |||| ||||| || || | |||| Sbjct 23665 TGCTGTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGG 23724 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||||| |||||| | |||||||| || || |||||||| ||||| ||||| || Sbjct 23725 ACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 23779 >seq544 Length=17931 Score = 221 bits (244), Expect = 1e-52 Identities = 594/898 (66%), Gaps = 49/898 (5%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||| | ||| || | | || | |||| |||||||| ||||| || Sbjct 7599 CGGTTCGTGCTGTTCTCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 7540 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| |||| |||||| || Sbjct 7539 GCCTCGTTCTGGACGGCCGAGGAGTTGGACCTGGTGCACGACCTGAACGACTGGCAGAAG 7480 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||| ||||| || || Sbjct 7479 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCGGC 7427 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | || ||||| | Sbjct 7426 GAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGG 7371 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || | |||||||| || ||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 7370 TGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGG 7311 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT-TGTTC 61401 | ||| | |||||||| |||||||||| ||| | ||| |||| | |||| Sbjct 7310 TCTACTCGCTGCTCATCGACACGTACATCAAGGATACGATGGAGAA-GAACCACCTGTTG 7252 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 || || |||||||| ||| || ||| ||| ||| | ||||| |||| ||| | Sbjct 7251 CGCGCTATTGAGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGC 7192 Query 61462 -ACCAGTACAACGGCTACATTTGGT----GAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||| | ||| | | | || || ||||||| || || | ||| || | Sbjct 7191 GACCCG-----CGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAG 7137 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||| || || || | | ||||| ||| | ||||| || || || |||| Sbjct 7136 GCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 7077 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 |||| |||| |||| ||| ||| | || ||||||||||||||||| || || | Sbjct 7076 CCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACGGACTTCG 7017 Query 61637 C-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | || || || || ||||| || | | ||| || ||| | Sbjct 7016 CGTGCCTCATG-TACTCCAAG-----CTGGTCAACAAACTTCCCGAGAGCCGCGTGCACG 6963 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 |||| || |||||||| || || ||||| || || || || ||| | ||||||| Sbjct 6962 AGATCGTCCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCCCGTGG 6903 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 |||||||||||||| | || |||| ||||| || || || || |||||||| | Sbjct 6902 AGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCC 6843 Query 61814 TGTTGGTCGATTTGGGTATG---AAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 || || | |||| || |||| |||| || || ||||| || || | | Sbjct 6842 TGCTGTACTCGCTGGGCGTGCCCAAGC---TCTACAACGTCAAGAACCCCTTCGACTGGA 6786 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||||||| |||||| | |||||||| || || |||||||| || || ||||| || Sbjct 6785 TGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 6728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528834955120