Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq1777 509 4e-141 seq4262 120 7e-24 seq2260 107 5e-20 >seq1777 Length=3174 Score = 509 bits (564), Expect = 4e-141 Identities = 898/1299 (69%), Gaps = 21/1299 (2%) Strand=Plus/Plus Query 873 GACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAAGATCTCGAGGCTCTCCTT 932 ||||||||||||||||| || ||||| || ||| | || ||||| || | || || Sbjct 824 GACCGTCAGTGGGACGCTCGATTCAACGTGCCTGCGGACGAAGACCTACAACTACTACTC 883 Query 933 CTCAATGTCAAGAGC--GAAGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAG 990 ||| |||| | ||| || ||||| || ||||| ||| ||| || | || | Sbjct 884 GACAACATCAACGCCCTGAAC--GATCAAGGCAAATTCCAGTACGTCCTGGTGAGCGGCG 941 Query 991 TAGAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTC 1050 | |||||||| |||||||| | |||| || ||||| |||||||| |||||| || Sbjct 942 TCGAGATCGGCGATCGTCCCTTCCAAGGAGATTACCTGATCAAGCATGTGCACTGCGCCT 1001 Query 1051 TGGTGTACAATAACCGCGTCTCGAAG--AACTCCGTGCTGAAGAATCTTCAAATCAAGCA 1108 | || | | ||||| || || || || | || || | || |||||| Sbjct 1002 TCGTCTTCCCCAACCGGATCAGCAAATCAAGTC--TACTCAAACAACTGGGCATCAAGAC 1059 Query 1109 AGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGA 1168 ||||| ||||||||||| ||| ||| ||||| || ||| | || || |||||||| Sbjct 1060 TGGCAACGGCTATTACCTCTCTCCTCGTCGGCGTGACCTCCCTGTGCAGGGATGGATCGA 1119 Query 1169 TCATCACACCAAGTCAAAAACGAAAATCAACGAGG-ACT--TCAAGCTGTATGAGTACGG 1225 ||| |||| ||| | || || || ||||||||| ||| || || | || | ||| Sbjct 1120 TCACCACAAGAAGACCAAGACCAAGATCAACGAGACACTGTTC---CTCTTCGAATCCGG 1176 Query 1226 CACTCTACCTGCTGACAAACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAGGA 1285 || || || || | || | || | || ||| || | || || Sbjct 1177 TGTTCCCCCAGCCGATACGCCTGGCGCCATTGAACCTGTCGTCAAACGAAGTCAGGAAGA 1236 Query 1286 AAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGGACG 1345 |||||| | || || | || ||||| ||||||| || |||||||| || || || Sbjct 1237 GAAGAAGCGGAAGCTCAATGACATCATCGTGGAGATGAAGGGGATGATCGAGGAGGGCCG 1296 Query 1346 CGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTGAA 1405 || ||||||| ||| ||||||| ||||| |||||| | || |||||||| ||| | || Sbjct 1297 AGAGAAGGAAGCGTTCGCCAAGTTCCCTCGCAACTACCTAACGTATGGAGAGAAGATCAA 1356 Query 1406 AGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCT 1465 || ||| || || | || ||| ||||||| | ||| |||| ||||||||| | Sbjct 1357 GGCAATGGTCAGCCAACAGCGCAACTACTTCAAGAATGATGGTCACCCACACATCTGGAT 1416 Query 1466 TACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTA 1525 || || |||| || |||||||||||||| || | || ||| | || || ||| || Sbjct 1417 TATGGGGTCTCCAGGCTCTGGCAAGTCTGCTATTCTCCAAGTCGTGTACCCAAAGTACTA 1476 Query 1526 CAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACAT 1585 ||||||| | || || || |||||||| | || | | | ||||||||||| Sbjct 1477 CAACAAGGACCTCAACTCTCGCTTCTTCGAACTCTATGATCGGGAGACGCACACGCACAC 1536 Query 1586 GCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAGAC 1645 ||| || |||||| | ||||| |||| || || || | || || |||||||| ||||| Sbjct 1537 GCTACTCCAAGATCTGGATCATGCGACCGTCGAGAAACTCGGCGTTCAGTTCCTCAAGAC 1596 Query 1646 CATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCG 1705 ||||| || |||||||| ||||| ||||||| ||||||||| | |||||||| | || Sbjct 1597 GATCTGCGATGAAGCTGGATTCCCGATTGACCAGAAGTACAAGTCCCCGCAACTCACGCG 1656 Query 1706 TACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCC 1765 || ||||| ||||| || || |||||| ||||| |||||||| | || ||||| |||| Sbjct 1657 AACGACTGTATTGGTTTCCTCGAACTTCGCCATCCACGATGTGCTCCCCGAAGATATGCG 1716 Query 1766 AGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGT 1825 || || || || || || ||| || |||||||| || |||||||| | || | | Sbjct 1717 TGGTCGGAACGAGAACCTGCTGGCACTTCGTCGTCGATTTTATGAAGTCCATGTGGGAGA 1776 Query 1826 TCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAAACG 1885 || ||| | | || || | || || ||||| ||||| || | || || ||||| Sbjct 1777 CTTTCTGCGGCTTCTGGGCGTCAAACTACTGTCCAAGTATGAGATCAAGGGACTGAAAAT 1836 Query 1886 CGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTACACTCGTGACATTCC 1945 | || || || |||||| |||||| ||||| |||||| ||| ||| |||| || Sbjct 1837 GGCTGGCAACCAGGATCCACGCAAACTGTTCATCATGTGGGACTACCTTCGCAACATACC 1896 Query 1946 CACTGGAGAGTCGTTGAAGACTGCCAAGGAATACCAGCAGATCATCAAGGATCACTACTA 2005 ||||| || | ||||||| || | || | ||| ||| | ||| ||||| Sbjct 1897 GACTGGTGAACCACTGAAGACAGCTGAAGAGTTCCAAGAGACGGTGAAGACAGCGTACTA 1956 Query 2006 CGGAACGAACACTTCGCCTCACTCGAGTCAGTAAGTAAAAGACGATGTGGGACTTAACAC 2065 ||| | | | ||| |||| || ||||||||||||| | | |||||||||||||||| Sbjct 1957 CGGGAAGCAGACTCCGCCAAAC---AGTCAGTAAGTAATATTCCATGTGGGACTTAACAC 2013 Query 2066 TGCCAGGATACAAGTATCTAGGACCAGGAAACAAACTTGACAAGGGAGAATCAAATAACG 2125 | || ||||||| |||||||||||| || ||||||||| ||||||| || ||| || | Sbjct 2014 TCCCTGGATACAGGTATCTAGGACCTGGTAACAAACTTAACAAGGGCAAACCAA--AAGG 2071 Query 2126 AGAA--TGACAGAGTTGCTTTAGCACATGATATTGCTTA 2162 | || ||| || | ||| || |||||||| ||| ||| Sbjct 2072 AAAAAGTGATAGCGCTGCATTGACACATGATGTTGGTTA 2110 >seq4262 Length=4109 Score = 120 bits (132), Expect = 7e-24 Identities = 309/471 (66%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 1281 GAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAA 1340 || ||||||||| | ||||| || || || ||| |||||||| |||||| || | Sbjct 2353 GAAGAAAAGAAGCGCAAACTAGATGACATCCTCATCGAGATGCGGGGCATGTACGCCAAC 2294 Query 1341 GGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAG 1400 |||| || || ||| ||| ||||||| || || | || || ||||| ||| Sbjct 2293 GGACAAGACGAAGAATGCTTTGCCAAGTTCCCGCGGACGGCACTGCAATACGGAGAGAAG 2234 Query 1401 CTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATC 1460 | || || ||| || || | | | ||||||||| || ||||| |||||| Sbjct 2233 ATCAAGGCCATGCTCCACCAATGCAGCAGCAAACTCAAGAGCACAGGCGACCCGCACATC 2174 Query 1461 TGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCG 1520 ||||| || |||| || || || || |||||| ||||| |||||||||| Sbjct 2173 TGGCTCCACGGACCTCCCGGGATCGGAAAATCAGCCATCCTGCAGTTCATCTATCCCAAC 2114 Query 1521 TATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACG 1580 ||||| || || || |||| || |||||||| | ||| | || ||||| Sbjct 2113 ACGTACAAGAAAAACCTCTACAATCGGTTCTTCGATCTCTACGACGACAAGGTGCATGAC 2054 Query 1581 CACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTA 1640 ||||| |||||| | || | || ||| | || || ||| || | ||||| Sbjct 2053 CACATTCTTCTTGAGGACCTGGACCACGATGCTGTCGATAAGCTGTCGACGAACTTCCTC 1994 Query 1641 AAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 ||||| ||||||| ||| | || ||||| || || || ||||||||||| || || || Sbjct 1993 AAGACACTCTGTGATGAATCCGGCTTCCCCGTCGATCAGAAGTACAAGACTCCACAGCTC 1934 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATT 1751 | || || | | ||| | ||||||||||||| ||| || ||| Sbjct 1933 ACGCGGTCCGTCATACTCGTCACAAGCAACTTCACCATCCCCGACGTCATT 1883 >seq2260 Length=4509 Score = 107 bits (118), Expect = 5e-20 Identities = 216/318 (68%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 1435 TCAAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTG 1494 ||||||| | ||| ||||| ||||||||||| || | || || || || || | Sbjct 2002 TCAAGAGTACCGGGGACCCGCACATCTGGCTACACGGACCACCAGGACACGGAAAATCGG 2061 Query 1495 CCATCTTGCAGGT-CATCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTC 1553 ||||| | ||| | ||||||||| ||||| ||||| || ||||||| |||||| Sbjct 2062 CCATCCT-CAGCTTCATCTATCCCAACACGTACAAGAAGAACCTCTACAACCGCTTCTTC 2120 Query 1554 GACTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACGACG 1613 || | ||| | || ||||| ||||| | |||| |||| | || ||| | Sbjct 2121 GATCTCTACGATGACAAGGTGCATGACCACATTCATCTTGAAGACCTGGACCACGATGCT 2180 Query 1614 GTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTT 1673 || || ||| || | ||||| ||||| ||||||| || || || ||||| || Sbjct 2181 GTCGATAAGCTGTCGACGAACTTCCTCAAGACACTCTGTGATGAGGCCGGGTTCCCCGTC 2240 Query 1674 GACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTC 1733 ||||| ||||||||||| || ||||| | | | | || ||||| | ||||||| Sbjct 2241 GACCAGAAGTACAAGACACCACAACTCACGAGGAGCGTCATCCTGGTCACCAGCAACTTC 2300 Query 1734 ACCATCAACGATGTGATT 1751 |||||| ||| || ||| Sbjct 2301 ACCATCCCCGACGTTATT 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896548159210