Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2112 93.3 2e-13 seq4657 91.5 6e-13 >seq2112 Length=11771 Score = 93.3 bits (102), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 222427 GCCCTCGGCGTGGCCTACCTCCACTCGCGCACCCCGTCCATCATCCACCGCGACCTCAAG 222486 |||| || | || ||||||| |||||| || | ||| | | |||||||||||||||||| Sbjct 11421 GCCCACGCCTTGACCTACCTGCACTCGTGCGCGCCGCCAGTGATCCACCGCGACCTCAAG 11362 Query 222487 TCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG--AAGGTGGCCGACTTTGGGTTCG 222544 ||||||||| | ||| || ||| || || || | |||||| | |||||||| || Sbjct 11361 TCCAGCAACATCCTCCTGAACGAGGCCATG--GACGCCAAGGTGACGGACTTTGGCATCT 11304 Query 222545 CGCGGATCAAGGAAACCAACGCCACCATGAC-ACGGTG--CGGCACGCCGTACTGGACGG 222601 | || || | | |||| |||||||| ||| | ||| ||| || |||| || Sbjct 11303 CTCG---AGAGCGCATCGACGCGACCATGACGGCGGGGGTCGGTACGTCGCTGTGGATGG 11247 Query 222602 CACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGC 222660 | || ||| | || ||||| ||| ||| ||||| ||| | | |||||||||| Sbjct 11246 CTCCGGAGGTGATGCTGGGCGAGCGGTACGACGACAAGGCGGACATGTTCTCGTTCGGC 11188 >seq4657 Length=18351 Score = 91.5 bits (100), Expect = 6e-13 Identities = 166/238 (70%), Gaps = 19/238 (8%) Strand=Plus/Plus Query 222472 CACCGCGACCTCAA--GTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGG 222529 ||||| ||||| || |||| ||| ||||| |||| | | | | || ||| || Sbjct 13996 CACCGAGACCTGAAAAGTCC--CAATCTGCTGGTGGACAAGAACTTCAACATCAAGTTGT 14053 Query 222530 CCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG---TGCG 222583 | |||||||| | || || |||||| || ||| ||||||||| | |||| Sbjct 14054 CGGACTTTGGACTGGCCCGTGTCAAGG---CCCACGTGCAGACCATGACAGGAAACTGCG 14110 Query 222584 GCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGAGAAGG 222640 ||||| | | |||| ||| |||||| | | || ||| || ||||| ||||||| Sbjct 14111 GCACGGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG---TACACGGAGAAGG 14167 Query 222641 CCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTA 222698 ||||||| | ||||||||| ||| |||| |||||| || |||| ||| || |||| || Sbjct 14168 CCGACGTGTTCTCGTTCGGTATCGTCATCTGGGAGATCGTCACAGGCGAGTGTCCGTA 14225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084518031321234