Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2797 816 0.0 seq88 248 4e-63 seq220 140 1e-30 >seq2797 Length=2177 Score = 816 bits (904), Expect = 0.0 Identities = 582/663 (88%), Gaps = 4/663 (1%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| || Sbjct 888 TGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATAT 947 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1007 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1008 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 1067 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCACT-CTTCTGCG 260 |||| ||||||||| | || | ||| | || | | || ||| ||| | || | Sbjct 1068 GCAATCAGACTTGCACTTGGT-GTTCATCAGGGTTTCGTGCCCTGTGTACTTCATCAA-G 1125 Query 261 GTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 ||||||||||||||| | | | ||| ||||||||| | ||||||||||| |||||| Sbjct 1126 TTCAGGCCAGCATCAGTTTGAGTGGTTAGATAAAGGCTTGGAGAATGTGGCCCTCTTCGG 1185 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380 ||||||||||||| | |||| |||| ||| | |||||||||| ||||||| |||||| Sbjct 1186 GGGGTGTTATAGCTCCAGGTGCAATGTAGCCTACTTGGACTGAGGACCGCGCTTCGGCTA 1245 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || | Sbjct 1246 GGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGTACCT 1305 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||||||||||||||||| |||||| | ||||||||||||||||||| |||| ||| Sbjct 1306 AATATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGCTGGTGAGAA 1365 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 ||| | |||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1366 CCCTTAAGGGTGCATCATCGACCGATCTTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 1425 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | | || ||||||||||||| ||| |||| | |||||||||||||||||||||||||| Sbjct 1426 ATTGGGTGCGACCCGAAAGATGATGATCTATACGTGAATAGGGTGAAGCCAGAGGAAACT 1485 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1486 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGG 1545 Query 681 CGA 683 ||| Sbjct 1546 CGA 1548 >seq88 Length=70487 Score = 248 bits (274), Expect = 4e-63 Identities = 242/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 7630 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 7571 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| |||||||||||| || |||| |||| | || Sbjct 7570 AACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 7511 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| ||||| || |||| Sbjct 7510 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 7452 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 7451 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 7392 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 7391 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 7332 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 7331 TTGGGTATAGGGGCGA 7316 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 8178 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 8119 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 8118 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 8059 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 8058 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 8019 >seq220 Length=40724 Score = 140 bits (154), Expect = 1e-30 Identities = 125/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||| ||||||||| Sbjct 1440 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTCAAGCTAAAT 1499 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| | |||| |||||| | | ||| |||| ||||||| ||| | ||||| || Sbjct 1500 ATTGGTGCGGGACCAATAGCGAATACGTACCGTGAGGGAAAGATAAAATGAACTTTTAAA 1559 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | ||||||||| || || ||||| || |||||||||| Sbjct 1560 ACAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAA 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079909459550