Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq88 381 1e-103 seq4135 136 7e-30 seq757 125 1e-26 >seq88 Length=70487 Score = 381 bits (422), Expect = 1e-103 Identities = 243/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 5158 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 5217 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 5218 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 5277 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 5278 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 5337 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 5338 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGG 5397 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 5398 CCACGCTTTCACGGTTTGTATTCA 5421 >seq4135 Length=1283 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||||| ||| ||||||||||| ||||||| | ||||||| |||||||||||||| |||| Sbjct 1044 CTTCGCAATGGTAGGAAGAGCCAACATCGAGGAATCAAAAGGCAACGTCGCTATGGACGC 1103 Query 187 TTGG--CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1104 TTGGAACTGCCCCAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 1150 >seq757 Length=30557 Score = 125 bits (138), Expect = 1e-26 Identities = 97/113 (86%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| || ||||||| || | | ||| |||||||||||||||||||| ||||||| Sbjct 26849 TACTGGGCTGAATTACTGTTTAGACAACGAACTCATCAGTAGGGTAAAACTAGCCTGTCT 26908 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 || || ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 26909 CACGATGGTCTAAACCCAG-TCACGTTCCCTATTAGTGGGTGAACAATCCAAC 26960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854363935776