Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1255 293 2e-74 seq150 242 3e-59 seq898 228 6e-55 >seq1255 Length=9666 Score = 293 bits (324), Expect = 2e-74 Identities = 1102/1694 (65%), Gaps = 56/1694 (3%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | ||| || Sbjct 1533 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAG-TAAGCTT 1591 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || |||| |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 1592 GC-TAATGGTCGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCAC 1650 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || |||| || ||| | | || | || | |||||||| || ||||||||| Sbjct 1651 CACGGTCAGCAGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 1709 Query 65300 AGGC----GACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTG 65354 | ||||| ||| || || | | | ||| || ||||||| | ||| Sbjct 1710 TTGTCCTTGACGTTG-TCA---GGGATGGATTTCACCTTCTGCACGGAACCACCGTCGTT 1765 Query 65355 CAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCA 65414 || | | | || |||| | | ||| | |||| ||||| || | | || Sbjct 1766 CAGGA-TCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCA 1824 Query 65415 AGTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGG 65471 || || ||| | || | | |||||| |||| || ||||| || || ||||| | Sbjct 1825 GGT-AC--TTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCG 1881 Query 65472 ACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCA 65531 ||||| || || | ||| ||| ||||||| || || || |||||||| || || |||| Sbjct 1882 ACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCA 1941 Query 65532 TGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCA--ATGTTGTGACGCAATTC 65589 |||| || |||| | ||||| || | ||||| ||| | | ||| | || | Sbjct 1942 TGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTG--TTTAATCACGTTCTCCTTCAGCGC 1999 Query 65590 GTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||||| | || | | | | | |||||| || || | | | Sbjct 2000 AGCCCAGTTCCACA--GACCCGACGAAGGCGTG-ATGCCCCACATGTCGAACTGGAAGAT 2056 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || | ||||| || || || |||| | |||||| || ||||||||| | | Sbjct 2057 ACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTC 2116 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | | || | || ||||||||||| ||| || || |||| Sbjct 2117 -CATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCTCAC 2175 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | |||| ||||||||| ||| | || |||||| | || | |||||||||||| || Sbjct 2176 GAGCCTGCTCGCTCTCGAACG-CGTAGTTCATCAGAATGAACGCGTCGGCCAGACCCTGC 2234 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || || || || | || || || |||| ||||| | |||||| | || |||||| Sbjct 2235 ACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAG 2294 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAAT 65947 || |||| ||| || | || | ||||| |||||||| | || | | ||| | Sbjct 2295 TAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCA--CCTCGTACA 2352 Query 65948 TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGG 66007 ||| | | ||| | || | | | | |||| |||||||| ||| Sbjct 2353 GCTTC----TGGTA--GTTGAACAC-------ACCGTCCTCCTCCACGAACTTGGGCAGG 2399 Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 || | || || |||||||| || || | ||| || || | || ||||| | | ||| Sbjct 2400 GCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCG 2459 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || || |||| |||||||||| ||||| || || |||||| ||| Sbjct 2460 CAGCACAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCC 2519 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 || |||||||||| |||| | || || ||||| | |||| || | ||||||| | Sbjct 2520 GCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAAC 2579 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTA 66246 || || | || || | || | | | | || | | ||| ||||| | ||||| Sbjct 2580 CACAGCTGCTGGGCGTTAATGGT-CTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGTA 2638 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 |||| || || || ||||| ||| |||| | ||| | || || || | Sbjct 2639 GAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAA 2698 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||| ||| | |||| || || | ||| || ||||| || | |||||| || Sbjct 2699 CAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGC 2758 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| || ||||| || || ||| ||| ||||||| || ||||| | ||| ||||| Sbjct 2759 GTAGAACAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAA 2818 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 ||| || | |||||| ||||| || |||||||||||||||||||||||| | || ||||| Sbjct 2819 CTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCC 2878 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||| || ||||| |||||||| || | |||||| || |||| ||| || | || ||| Sbjct 2879 GCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCC 2938 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACAT 66605 || || ||| || ||||| ||| | | | | || || || || | ||| ||| Sbjct 2939 ATTGGACGAGCCGTTCGTGCC-TCGGATGTAGCTGTTGGTGGCGCGGATGTTGTG--CAT 2995 Query 66606 TCAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAA 66663 | || || || || |||||| ||| |||||| || || | | || | | Sbjct 2996 GCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 3055 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723 ||||| || |||||||| ||| |||| ||| ||| |||| || || || || Sbjct 3056 GATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACG 3115 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783 || ||| |||| |||||| ||||| || |||||||| ||| | | | |||| Sbjct 3116 CGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAG 3175 Query 66784 ATTGTACGTCTCGA 66797 | ||||||||||| Sbjct 3176 CTCGTACGTCTCGA 3189 >seq150 Length=92316 Score = 242 bits (268), Expect = 3e-59 Identities = 585/880 (66%), Gaps = 13/880 (1%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| |||||||| Sbjct 90874 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 90933 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || ||||||||||||| |||||| |||| ||| | ||| | |||||||||| | Sbjct 90934 GCCTCCTTCTGGACGGCCGAGGAGCTCGACTTGGTGCACGACCTCAATGACTGGGCGAAC 90993 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | ||| | || | || ||||| || || ||| |||| |||||||| || ||| Sbjct 90994 CTCACGAACAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGAC 91053 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 |||||||| || ||||| | || |||| ||| | || ||||| ||| |||| Sbjct 91054 GGTATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGGTGCCGGA 91109 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || || ||||||||||||||||| ||||| ||||| ||||||||||| | ||| Sbjct 91110 GGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTC 91169 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | ||||| || |||||||||| ||| | | || || | || | |||||| Sbjct 91170 GCTGCTCATTGACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCAT 91229 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTA 61468 |||||| || ||| || | | |||||| | ||||| ||| ||| | ||| | Sbjct 91230 CGAGACCATCCCGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCG-C 91288 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 | | | | || || ||||||| ||||| | || ||||| | || ||| Sbjct 91289 GTGTGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCT 91348 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 || || || | | ||||| ||| | ||||| || || || ||||||||||| | || Sbjct 91349 CGGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCT 91408 Query 61589 TCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTAT 61648 || |||||| | || || |||||||||||||| || || || || || Sbjct 91409 TCTCGAATGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGC---TTGCCTCA 91465 Query 61649 TCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGG 61708 | | | | ||| | || | | |||| || ||| |||||||| || || | Sbjct 91466 TGTACTCCAAGCTGATCAACAAGCTGCCGGAAAGCCGCGTGCACGAGATTGTGCGCGACG 91525 Query 61709 CGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGA 61768 | || || || || || || || ||| | | || || | ||||| |||| Sbjct 91526 CTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGA 91585 Query 61769 ATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGG 61828 | | || || |||| || || || || || || |||||||| ||| || | ||| Sbjct 91586 ACTCGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGG 91645 Query 61829 GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGG 61888 | || |||||| || | || ||||| || || | ||||||||||| |||||| Sbjct 91646 GCGTGTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGC 91705 Query 61889 ATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | |||||||| || || |||||||| ||||| ||||| || Sbjct 91706 AGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 91745 >seq898 Length=32307 Score = 228 bits (252), Expect = 6e-55 Identities = 594/891 (67%), Gaps = 35/891 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| ||||| || Sbjct 18633 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 18692 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 |||||||||||||||| |||||| |||| || | ||| | || ||||||| | Sbjct 18693 GCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTGCACGACCTCAACGACTGGGCGAAG 18752 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 18753 CTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGAC 18812 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || ||||||||||||||| | || |||| ||| | || ||||||||| | || Sbjct 18813 GGCATCGTCAATGAGAATCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAAGTGCCCGA 18868 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || || |||||||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 18869 GGCTCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTC 18928 Query 61350 TGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGA-TTGTTCAATGC 61406 | ||||| || |||||||||| || | || | ||| |||| | | | ||| Sbjct 18929 GCTGCTCATTGACACGTACATCAAGGACACCGTGGAGAA---GAACCACCTCCTGTGTGC 18985 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACC- 61464 ||||| ||||| ||| || || |||||| | ||||| |||| ||| | ||| Sbjct 18986 TATCGAAACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCC 19045 Query 61465 -AGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 || || |||| || || ||||||| ||||| ||| ||||| | | Sbjct 19046 GCGTGTGTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCT 19101 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| || || ||| | | |||| ||| | ||||| || || || ||||| || | Sbjct 19102 TCTTCTCGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGC 19161 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG-- 61639 | | |||| || ||| |||| ||||||||||||||||| ||||| || || Sbjct 19162 TCAGCTTCTCGAACGAGATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCC 19221 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | || || || | | |||||||| | | ||||| || || ||||| | Sbjct 19222 TCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGAGTCCACGAGATCG 19275 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACT 61757 | || || || || | || || || || || |||| ||| | | || || || Sbjct 19276 TGCGCGACGCTGTGAAGATTGAGCACGAGTTCGTCTG--CGACTCGCTCCCGGTGGAGCT 19333 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 ||||||||||| | || |||| ||||| || || || || || ||||||||| | Sbjct 19334 GATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT 19393 Query 61818 GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACAT 61877 | | ||||| || |||||| || || |||||||| || | |||||||| Sbjct 19394 GTACTCGCTGGGTGTGTCCAAGATCTACAACGTCAAGAACCCATTCGACTGGATGGACAT 19453 Query 61878 GATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||| ||||| | |||||||| || || ||||||| ||||| ||||| || Sbjct 19454 GATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGGGCGAGTA 19504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547547735440