Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1926 381 1e-103 seq3522 136 7e-30 seq3144 136 7e-30 seq809 125 1e-26 >seq1926 Length=11180 Score = 381 bits (422), Expect = 1e-103 Identities = 243/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2815 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2756 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 2755 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 2696 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2695 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 2636 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 2635 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGG 2576 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 2575 CCACGCTTTCACGGTTTGTATTCA 2552 >seq3522 Length=3453 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||||| ||| ||||||||||| ||||||| | ||||||| |||||||||||||| |||| Sbjct 240 CTTCGCAATGGTAGGAAGAGCCAACATCGAGGAATCAAAAGGCAACGTCGCTATGGACGC 181 Query 187 TTGG--CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 180 TTGGAACTGCCCCAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 134 >seq3144 Length=2769 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||||| ||| ||||||||||| ||||||| | ||||||| |||||||||||||| |||| Sbjct 240 CTTCGCAATGGTAGGAAGAGCCAACATCGAGGAATCAAAAGGCAACGTCGCTATGGACGC 181 Query 187 TTGG--CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 180 TTGGAACTGCCCCAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 134 >seq809 Length=30912 Score = 125 bits (138), Expect = 1e-26 Identities = 97/113 (86%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| || ||||||| || | | ||| |||||||||||||||||||| ||||||| Sbjct 4264 TACTGGGCTGAATTACTGTTTAGACAACGAACTCATCAGTAGGGTAAAACTAGCCTGTCT 4205 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 || || ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 4204 CACGATGGTCTAAACCCAG-TCACGTTCCCTATTAGTGGGTGAACAATCCAAC 4153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854353888032