Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq256 235 2e-59 >seq256 Length=39382 Score = 235 bits (260), Expect = 2e-59 Identities = 259/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 3238 GATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 3297 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 3298 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 3356 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || |||| |||| |||||| ||| ||||| ||||||||| Sbjct 3357 GGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGATGAAGGCTA 3416 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 3417 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 3476 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 3477 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 3535 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||| ||||||||||| |||||| Sbjct 3536 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 3571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497519174528