Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314455.1_202015-10- 14] 5,397 sequences; 52,734,927 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1233 293 2e-74 seq588 242 3e-59 seq1009 228 6e-55 >seq1233 Length=11135 Score = 293 bits (324), Expect = 2e-74 Identities = 1102/1694 (65%), Gaps = 56/1694 (3%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | ||| || Sbjct 8224 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAG-TAAGCTT 8166 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || |||| |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 8165 GC-TAATGGTCGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCAC 8107 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || |||| || ||| | | || | || | |||||||| || ||||||||| Sbjct 8106 CACGGTCAGCAGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 8048 Query 65300 AGGC----GACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTG 65354 | ||||| ||| || || | | | ||| || ||||||| | ||| Sbjct 8047 TTGTCCTTGACGTTG-TCA---GGGATGGATTTCACCTTCTGCACGGAACCACCGTCGTT 7992 Query 65355 CAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCA 65414 || | | | || |||| | | ||| | |||| ||||| || | | || Sbjct 7991 CAGGA-TCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCA 7933 Query 65415 AGTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGG 65471 || || ||| | || | | |||||| |||| || ||||| || || ||||| | Sbjct 7932 GGT-AC--TTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCG 7876 Query 65472 ACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCA 65531 ||||| || || | ||| ||| ||||||| || || || |||||||| || || |||| Sbjct 7875 ACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCA 7816 Query 65532 TGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCA--ATGTTGTGACGCAATTC 65589 |||| || |||| | ||||| || | ||||| ||| | | ||| | || | Sbjct 7815 TGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTG--TTTAATCACGTTCTCCTTCAGCGC 7758 Query 65590 GTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||||| | || | | | | | |||||| || || | | | Sbjct 7757 AGCCCAGTTCCACA--GACCCGACGAAGGCGTG-ATGCCCCACATGTCGAACTGGAAGAT 7701 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || | ||||| || || || |||| | |||||| || ||||||||| | | Sbjct 7700 ACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTC 7641 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | | || | || ||||||||||| ||| || || |||| Sbjct 7640 -CATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCTCAC 7582 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | |||| ||||||||| ||| | || |||||| | || | |||||||||||| || Sbjct 7581 GAGCCTGCTCGCTCTCGAACG-CGTAGTTCATCAGAATGAACGCGTCGGCCAGACCCTGC 7523 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || || || || | || || || |||| ||||| | |||||| | || |||||| Sbjct 7522 ACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAG 7463 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAAT 65947 || |||| ||| || | || | ||||| |||||||| | || | | ||| | Sbjct 7462 TAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCA--CCTCGTACA 7405 Query 65948 TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGG 66007 ||| | | ||| | || | | | | |||| |||||||| ||| Sbjct 7404 GCTTC----TGGTA--GTTGAACAC-------ACCGTCCTCCTCCACGAACTTGGGCAGG 7358 Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 || | || || |||||||| || || | ||| || || | || ||||| | | ||| Sbjct 7357 GCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCG 7298 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || || |||| |||||||||| ||||| || || |||||| ||| Sbjct 7297 CAGCACAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCC 7238 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 || |||||||||| |||| | || || ||||| | |||| || | ||||||| | Sbjct 7237 GCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAAC 7178 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTA 66246 || || | || || | || | | | | || | | ||| ||||| | ||||| Sbjct 7177 CACAGCTGCTGGGCGTTAATGGT-CTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGTA 7119 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 |||| || || || ||||| ||| |||| | ||| | || || || | Sbjct 7118 GAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAA 7059 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||| ||| | |||| || || | ||| || ||||| || | |||||| || Sbjct 7058 CAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGC 6999 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| || ||||| || || ||| ||| ||||||| || ||||| | ||| ||||| Sbjct 6998 GTAGAACAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAA 6939 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 ||| || | |||||| ||||| || |||||||||||||||||||||||| | || ||||| Sbjct 6938 CTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCC 6879 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||| || ||||| |||||||| || | |||||| || |||| ||| || | || ||| Sbjct 6878 GCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCC 6819 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACAT 66605 || || ||| || ||||| ||| | | | | || || || || | ||| ||| Sbjct 6818 ATTGGACGAGCCGTTCGTGCC-TCGGATGTAGCTGTTGGTGGCGCGGATGTTGTG--CAT 6762 Query 66606 TCAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAA 66663 | || || || || |||||| ||| |||||| || || | | || | | Sbjct 6761 GCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 6702 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723 ||||| || |||||||| ||| |||| ||| ||| |||| || || || || Sbjct 6701 GATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACG 6642 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783 || ||| |||| |||||| ||||| || |||||||| ||| | | | |||| Sbjct 6641 CGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAG 6582 Query 66784 ATTGTACGTCTCGA 66797 | ||||||||||| Sbjct 6581 CTCGTACGTCTCGA 6568 >seq588 Length=22666 Score = 242 bits (268), Expect = 3e-59 Identities = 585/880 (66%), Gaps = 13/880 (1%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| |||||||| Sbjct 21002 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 21061 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || ||||||||||||| |||||| |||| ||| | ||| | |||||||||| | Sbjct 21062 GCCTCCTTCTGGACGGCCGAGGAGCTCGACTTGGTGCACGACCTCAATGACTGGGCGAAC 21121 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | ||| | || | || ||||| || || ||| |||| |||||||| || ||| Sbjct 21122 CTCACGAACAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGAC 21181 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 |||||||| || ||||| | || |||| ||| | || ||||| ||| |||| Sbjct 21182 GGTATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGGTGCCGGA 21237 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || || ||||||||||||||||| ||||| ||||| ||||||||||| | ||| Sbjct 21238 GGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTC 21297 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | ||||| || |||||||||| ||| | | || || | || | |||||| Sbjct 21298 GCTGCTCATTGACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCAT 21357 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTA 61468 |||||| || ||| || | | |||||| | ||||| ||| ||| | ||| | Sbjct 21358 CGAGACCATCCCGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCG-C 21416 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 | | | | || || ||||||| ||||| | || ||||| | || ||| Sbjct 21417 GTGTGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCT 21476 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 || || || | | ||||| ||| | ||||| || || || ||||||||||| | || Sbjct 21477 CGGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCT 21536 Query 61589 TCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTAT 61648 || |||||| | || || |||||||||||||| || || || || || Sbjct 21537 TCTCGAATGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGC---TTGCCTCA 21593 Query 61649 TCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGG 61708 | | | | ||| | || | | |||| || ||| |||||||| || || | Sbjct 21594 TGTACTCCAAGCTGATCAACAAGCTGCCGGAAAGCCGCGTGCACGAGATTGTGCGCGACG 21653 Query 61709 CGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGA 61768 | || || || || || || || ||| | | || || | ||||| |||| Sbjct 21654 CTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGA 21713 Query 61769 ATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGG 61828 | | || || |||| || || || || || || |||||||| ||| || | ||| Sbjct 21714 ACTCGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGG 21773 Query 61829 GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGG 61888 | || |||||| || | || ||||| || || | ||||||||||| |||||| Sbjct 21774 GCGTGTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGC 21833 Query 61889 ATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | |||||||| || || |||||||| ||||| ||||| || Sbjct 21834 AGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 21873 >seq1009 Length=13826 Score = 228 bits (252), Expect = 6e-55 Identities = 594/891 (67%), Gaps = 35/891 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| ||||| || Sbjct 4213 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 4154 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 |||||||||||||||| |||||| |||| || | ||| | || ||||||| | Sbjct 4153 GCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTGCACGACCTCAACGACTGGGCGAAG 4094 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 4093 CTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGAC 4034 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || ||||||||||||||| | || |||| ||| | || ||||||||| | || Sbjct 4033 GGCATCGTCAATGAGAATCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAAGTGCCCGA 3978 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || || |||||||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 3977 GGCTCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTC 3918 Query 61350 TGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGA-TTGTTCAATGC 61406 | ||||| || |||||||||| || | || | ||| |||| | | | ||| Sbjct 3917 GCTGCTCATTGACACGTACATCAAGGACACCGTGGAGAA---GAACCACCTCCTGTGTGC 3861 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACC- 61464 ||||| ||||| ||| || || |||||| | ||||| |||| ||| | ||| Sbjct 3860 TATCGAAACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCC 3801 Query 61465 -AGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 || || |||| || || ||||||| ||||| ||| ||||| | | Sbjct 3800 GCGTGTGTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCT 3745 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| || || ||| | | |||| ||| | ||||| || || || ||||| || | Sbjct 3744 TCTTCTCGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGC 3685 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG-- 61639 | | |||| || ||| |||| ||||||||||||||||| ||||| || || Sbjct 3684 TCAGCTTCTCGAACGAGATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCC 3625 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | || || || | | |||||||| | | ||||| || || ||||| | Sbjct 3624 TCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGAGTCCACGAGATCG 3571 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACT 61757 | || || || || | || || || || || |||| ||| | | || || || Sbjct 3570 TGCGCGACGCTGTGAAGATTGAGCACGAGTTCGTCTG--CGACTCGCTCCCGGTGGAGCT 3513 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 ||||||||||| | || |||| ||||| || || || || || ||||||||| | Sbjct 3512 GATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT 3453 Query 61818 GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACAT 61877 | | ||||| || |||||| || || |||||||| || | |||||||| Sbjct 3452 GTACTCGCTGGGTGTGTCCAAGATCTACAACGTCAAGAACCCATTCGACTGGATGGACAT 3393 Query 61878 GATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||| ||||| | |||||||| || || ||||||| ||||| ||||| || Sbjct 3392 GATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGGGCGAGTA 3342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541849592080