Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1950 508 2e-141 >seq1950 Length=9356 Score = 508 bits (562), Expect = 2e-141 Identities = 393/460 (85%), Gaps = 13/460 (3%) Strand=Plus/Minus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGACC-- 141 ||||||||||||||||||||||| ||||| || || | ||| || || || | || Sbjct 717 CCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGCCCAG 658 Query 142 --TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGTa 193 ||| | |||| || | | | || | | ||| | | | |||| | |||||| Sbjct 657 ACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATAAGTA 598 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| ||| | || ||||||||||||||| || | | | ||||||||||||||||| Sbjct 597 AAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCTACA 540 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 539 CCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 480 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 479 GCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAG 420 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 419 TGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTAC 360 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 359 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTT 300 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| ||||||| Sbjct 299 GACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 260 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 9215 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 9156 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 9155 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 9121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635157877248