Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000149735.1_202008-03-03] 2,576 sequences; 66,652,401 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2516 264 9e-66 seq2561 246 2e-60 seq1300 246 2e-60 seq1932 230 2e-55 >seq2516 Length=319815 Score = 264 bits (292), Expect = 9e-66 Identities = 530/781 (68%), Gaps = 10/781 (1%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||||||||| ||||| | ||| || |||||||| || || | ||| || || | | Sbjct 121017 CCACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG 121076 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||| | ||| ||| ||||| || || |||| || ||||| | ||||| || | Sbjct 121077 TGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGT 121136 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||| ||| || |||||||||| |||| |||| ||| ||||||| || | Sbjct 121137 TCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCG 121196 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCT 66226 || | ||||||| ||| || | || || | ||| || | ||||| ||| Sbjct 121197 CGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCT 121256 Query 66227 TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACAT 66286 | ||||| | ||||| || ||||| || ||||| ||| | || | Sbjct 121257 TC----TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCG 121312 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 || || | || || | || ||| | || | | ||| ||||| ||| || Sbjct 121313 GGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAAC 121372 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 ||||| || | ||| || ||||||||||| ||||| || || ||| ||| ||||||| Sbjct 121373 AGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGG 121432 Query 66407 TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 || ||||||| || |||||||| || | |||||| ||||| || ||||||||||||||| Sbjct 121433 TTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCG 121492 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 |||||||| | || ||||| || || ||||| || ||||| || | |||||||| Sbjct 121493 AACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACC 121552 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 | || ||| || | || |||||| ||| || || |||||| ||| | | | |||| Sbjct 121553 CTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGT 121611 Query 66587 -GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| | | | | |||||||| |||||| ||| |||||| || || Sbjct 121612 GGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCA 121671 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | | || | | ||||| ||||| ||||| ||| |||| ||| ||| | || Sbjct 121672 CTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACA 121731 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || || || || || ||| |||| ||||| ||||| || ||||||||||| Sbjct 121732 CGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAA 121791 Query 66766 G 66766 | Sbjct 121792 G 121792 >seq2561 Length=604796 Score = 246 bits (272), Expect = 2e-60 Identities = 593/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 370704 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 370763 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 370764 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 370823 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| |||| ||||| || || ||| Sbjct 370824 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCATTCTTCGCTGCCAGCGAC 370883 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 370884 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 370941 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 370942 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 371001 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 371002 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 371061 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 371062 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 371121 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 371122 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 371177 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 371178 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 371237 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 371238 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 371297 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 371298 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 371351 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 371352 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 371411 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 371412 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 371471 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 371472 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 371529 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 371530 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 371575 >seq1300 Length=5041 Score = 246 bits (272), Expect = 2e-60 Identities = 593/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 2574 CGATTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 2515 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 2514 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 2455 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| |||| ||||| || || ||| Sbjct 2454 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCATTCTTCGCTGCCAGCGAC 2395 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 2394 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 2337 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 2336 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 2277 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 2276 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 2217 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 2216 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 2157 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 2156 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 2101 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 2100 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 2041 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 2040 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 1981 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 1980 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 1927 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 1926 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 1867 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 1866 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 1807 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 1806 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 1749 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 1748 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1703 >seq1932 Length=9237 Score = 230 bits (254), Expect = 2e-55 Identities = 580/870 (67%), Gaps = 25/870 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 856 CGATTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 797 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 796 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 737 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 736 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGAC 677 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 676 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 619 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 618 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 559 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 558 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 499 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 498 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 439 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 438 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 383 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 382 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 323 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 322 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 263 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 262 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 209 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 208 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 149 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 148 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 89 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 88 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 31 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGA 61912 ||||| | |||||||| || || ||||||| Sbjct 30 CGCTGCAGGGCAAGACCAACTTCTTCGAGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555518352640