Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 3e-16 >seq19 Length=114107 Score = 91.5 bits (100), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 35 AGGTTGGCACTGGCCACGCCGTAGATGGTGGCGACAAACGCCACGGCAATGCCGCTG--C 92 || ||||||||||| || ||||| | ||| ||| ||| || || ||||| ||||| | Sbjct 45834 AGATTGGCACTGGCGACCCCGTACAGGGTTGCGGTAAAGGCAACAGCAAT--CGCTGGTC 45777 Query 93 CCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACCGA 152 | ||| | ||| |||| || |||| | || || || || ||||| || | ||||| Sbjct 45776 CGAGTCCTGTAGGATCGGTCAGACTGCCAAGTACCTGAATAAGTCCCATTACGGTACCGA 45717 Query 153 TGATGCCGATGGTCGGCGCGTAGCCGCCCATGCT--TTCAAAGACTTTGGC 201 |||| || || || || || |||||||| |||| |||||||| |||||| Sbjct 45716 TGATCCCCATCGTTGGAGCATAGCCGCC--TGCTGATTCAAAGATTTTGGC 45668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988754989824