Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= AAMG01001645.1 Length=355 Score E Sequences producing significant alignments: (Bits) Value seq4 105 1e-20 >seq4 Length=484832 Score = 105 bits (116), Expect = 1e-20 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 81 CTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGG 140 || |||||| | |||||||| |||| || | | ||| || ||||| ||| ||| || Sbjct 246495 CTCGCGGTGAGACTGCAGGAGATGTTTGGACAGCAGGAGACCCCGCGTCTTGGCGGTGGT 246554 Query 141 CG----CCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGAC 196 || ||| || || | || ||||||| ||| ||| |||| || ||||| || Sbjct 246555 CGAGTACCAC-TGACCA---TACATTTGCTGTCACCGGCGCAGCGGCCTGTACAGGTCAC 246610 Query 197 CCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGG 256 | ||||||||| || || ||||| || || ||||||||||| || | || || Sbjct 246611 ACGGGATCTGGCTAATTTTTGGCGAGAGACTTATTTTGAGGTGAAGAAAGACTTAAAAGG 246670 Query 257 GCGGTATCCGAAGCATTATTGGCCGGATGATCCG 290 || ||||| |||||||||||||||||||||||| Sbjct 246671 CCGTTATCCCAAGCATTATTGGCCGGATGATCCG 246704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1033552950528