Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq295 266 3e-66 seq2952 246 2e-60 >seq295 Length=50006 Score = 266 bits (294), Expect = 3e-66 Identities = 872/1340 (65%), Gaps = 35/1340 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||| || | ||| || || ||| || ||||| |||||| || || | ||| || Sbjct 31534 GAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTC 31475 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 | ||||||| | ||| || || || || ||||| ||||| ||||| || | | ||||| Sbjct 31474 ATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTT 31415 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 || | |||| | | | ||| | | | |||| | ||||| | Sbjct 31414 GCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAA-- 31357 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || | ||| |||||| || || | | | || | ||||| || || || | Sbjct 31356 GACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTG 31298 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGAGTGCGGCAA 65732 ||| | |||||| ||| ||||||||| | | || | |||||| | | || Sbjct 31297 GAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGT 31239 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 | || || |||||||| ||| || |||||||| || | ||||||| ||| || Sbjct 31238 AGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGGGCTCTCGAACG-CA 31180 Query 65793 TACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 || ||| |||| ||| | || || ||||| || || |||||||| | || || || Sbjct 31179 TAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGG 31120 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 |||| ||||| | |||||| || |||||||| |||| || || | ||| Sbjct 31119 CGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTC 31060 Query 65912 AAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGA 65971 || || || |||||||| | | || ||| | ||| || | | Sbjct 31059 AAGTTCCGGGTCACCACCTTG--GTCACCTCGTACAGCTTC----------TGGTA--GT 31014 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 || | | | || | ||||||||||||| ||||| | ||| || |||||||| || Sbjct 31013 TGAAC---ACT-CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACC 30958 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 || | ||| || || | || ||||| | ||| ||| ||||| || || |||| || Sbjct 30957 GCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATC 30898 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 ||||| | ||||| || || |||||| ||| || |||||||||| |||| |||| Sbjct 30897 GTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGC 30838 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 ||| ||||||| || | || | ||||||| ||| || | || || | ||| Sbjct 30837 ACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTC 30778 Query 66212 ---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || | ||||| |||| ||||| | ||||| || ||||| || || Sbjct 30777 TTGCGCGCGCGCCCCTCCTTC----TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCC 30722 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 ||| ||| | || | || || | || || | || ||| | || | | Sbjct 30721 CCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGC 30662 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| ||||| ||| || ||||| || | ||| || ||||||||||| ||||| || || Sbjct 30661 TTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCG 30602 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 ||| ||| ||||||| || ||||||| || |||||||| || | |||||| ||||| Sbjct 30601 GTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCA 30542 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || ||||||||||||||||||||||| | || ||||| || || ||||| || ||||| Sbjct 30541 CGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCG 30482 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || | |||||||| | || ||| || | || |||||| ||| || || ||||| Sbjct 30481 GGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCC 30422 Query 66568 GTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | ||| | | | |||| || || || | ||| | | | | |||||||| |||||| Sbjct 30421 GCGGAT-GTAGCTGTTCGTGGCGCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCC 30363 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 ||| |||||| || || | | || | | ||||| ||||| ||||| ||| Sbjct 30362 ACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCT 30303 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 |||| ||| ||| | || || || || || || ||| |||| ||||| | Sbjct 30302 GCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCG 30243 Query 66747 TGGGTGTAGCGTGCGTAAAG 66766 |||| || |||||||||||| Sbjct 30242 TGGGCGTCGCGTGCGTAAAG 30223 >seq2952 Length=1496 Score = 246 bits (272), Expect = 2e-60 Identities = 593/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 384 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 443 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 444 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 503 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 504 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGAC 563 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 564 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 621 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 622 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 681 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || || ||| | |||||||| Sbjct 682 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCGCTTGCTGCGTGCCATCG 741 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 742 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 801 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 802 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 857 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 858 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 917 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 918 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 977 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 978 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 1031 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 1032 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 1091 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 1092 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 1151 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 1152 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 1209 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 1210 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545943921280