Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq16 659 0.0 >seq16 Length=148473 Score = 659 bits (730), Expect = 0.0 Identities = 964/1354 (71%), Gaps = 38/1354 (3%) Strand=Plus/Plus Query 1630 AATGTGTAAAAAATTTTAACTCATAAGGAGAGTATTG-TAATGTCAATTATTACTGATGT 1688 ||| | ||| |||||| || | | ||||||| ||| | ||| | |||||| |||| || Sbjct 46737 AATTTTTAATAAATTTAAATTTA-AAGGAGATTATCACTCATGACTATTATTTCTGACGT 46795 Query 1689 CTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACAC 1748 ||||| || |||||||| ||||| ||||||||||| ||| ||||||| ||||| ||| Sbjct 46796 GTACGCTCGCGAAGTCCTCGACTCCCGCGGTAACCCTACAGTTGAAGTTGAAGTATACCT 46855 Query 1749 TGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGA 1808 || || || ||| |||| |||| ||| || || || || ||||| ||||||| ||||| Sbjct 46856 GGAGTCCGGCGCAATCGGACGCGCTATCGTACCATCCGGTGCATCCACTGGTGCCCACGA 46915 Query 1809 AGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGC 1868 ||| || || ||||| ||||| |||||| | |||||| ||| ||| || |||| Sbjct 46916 AGCCGTTGAGCTTCGCGATGGCGACAAATCCCGTTACCTGGGTAAAGGTGTTCTGCAAGC 46975 Query 1869 AGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTACGTGATCA 1928 ||| | ||||||||| | || ||| | | ||||| | || | | ||||| Sbjct 46976 TGTTAAAAACGTAAACGAAACAATCGCTCCAGAAGTAATCGGTATGGATGCATTGGATCA 47035 Query 1929 ACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGG 1988 || ||||| ||| |||||| || | || ||||| ||||||||||||||||| || Sbjct 47036 ACTGGGTATCGACAAATTGATGATCACTTTGGATGGTACGCCAAACAAAGGTAAACTGGG 47095 Query 1989 TGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGA 2048 ||| ||||| || || | ||| || || |||||||| || |||||||||||| || || Sbjct 47096 TGCTAACGCAATCCTGGCTGTATCCATGGCTGTAGCTCGTGCAGCTGCTGACGCTCTGGA 47155 Query 2049 AGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGAT 2108 | ||| | ||| ||||| |||||||||||| ||||||| |||||| |||||||| Sbjct 47156 CCTGCCATTGTACGTTTACCTGGGCGGATTCAACGCTAAAGTACTTCCAGTACCAATGAT 47215 Query 2109 GAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGAT 2168 |||||||||||||||||| || | ||| |||| | ||||| || ||| | Sbjct 47216 GAACATCATCAACGGTGGAGAGCATGCTGACAACAACATCGACGTTCAAGAGTTCATGGT 47275 Query 2169 TGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCA 2228 | | |||| ||| ||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 47276 TCTTCCTGTTGGAGCACCAAGCTTCAAAGAAGCTCTTCGCGTAGGTGCAGAAATCTTCCA 47335 Query 2229 CGCGCTTAAGAAAATCCTTAAAGAAC----GTGGACTTGAAACAGCCGTAGGTGACGAAG 2284 | || |||||| || || | || || | ||||| ||||||||||||| Sbjct 47336 CAACCT----GAAATCCGTACTGAGCTCCAAAGGCCTGAACACAGCTGTAGGTGACGAAG 47391 Query 2285 GTGGTTTCGC-----ACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCAA 2339 | || ||||| |||| | ||| |||| ||||| | | || |||||| | Sbjct 47392 GCGGCTTCGCACCAAACCTTGGTTC----GAAC-GAAGAAGCAATCACTACAATCATCGA 47446 Query 2340 AGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTGC 2399 ||| || ||| || || || |||||| || ||||| | || | ||| || Sbjct 47447 AGCGATTGAAAAAGCAGGTTACAAACCAGGCGTTGATGTATTCCTGGGTATGGACGTAGC 47506 Query 2400 ATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTGA 2459 || |||| |||||| | ||| ||||| || ||||| ||| || || Sbjct 47507 TTCCACTGAGTTCTACAA---AGATGGTAAA---TA----TACAC-----TTGCTGGCGA 47551 Query 2460 AGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAA 2519 ||| || | | ||| | || || | | ||| || | || |||| | || Sbjct 47552 AGGTAAATCT-TAC--ACTTCCGCTGAGTATGTTGACCTTCTGGCTTCATGGGTTGAGAA 47608 Query 2520 ATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATC 2579 |||||| |||||||| || ||||| |||||| |||| |||||||||| |||||||||| Sbjct 47609 ATACCCTATCATCACCATTGAAGACGGTATGTCCGAAGACGACTGGGATGGTTGGAAATT 47668 Query 2580 TCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAA 2639 || || ||| | || | ||||| ||| | |||||||| ||||| |||||||| || Sbjct 47669 GCTCACAGAAAAATTGGGAGACAAAGTACAACTCGTTGGTGATGACTTGTTCGTAACGAA 47728 Query 2640 CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGT 2699 ||| | || | | |||||| | |||| | |||||| ||||| |||||||| Sbjct 47729 CACAGAGCGTCTGGGTAGAGGTATCGAAGAAGGTATCGGTAACTCCATCCTGATCAAAGT 47788 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||||||||||||| ||||||||||| || || || ||||||||||| ||| || || Sbjct 47789 TAACCAAATCGGTACATTGACTGAAACATTCGATGCAATCGAAATGGCTAAACGTGCAGG 47848 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 |||||| || ||| | || |||||||| || || | ||||| ||||||||||| || Sbjct 47849 ATACACTGCTGTAATCTCTCACCGTTCCGGCGAGTCCGAAGACAGCACAATCGCTGACAT 47908 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || |||||||| ||||| ||||||||||| || ||| | || ||||| |||||||| Sbjct 47909 CGCTGTTGCAACAAACGCGGGTCAAATTAAAACGGGTGCTCCTTCCCGTACAGACCGTAT 47968 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAATACCG 2939 || || |||||||||||||| || || || || ||||| |||||| | || ||||| Sbjct 47969 CGCGAAGTACAACCAATTGCTCCGCATTGAGGATCAACTGGGTGAACTGGCTCAATACAA 48028 Query 2940 TGGTTTGAAATCATTCTACAACTTGAAAAAATAA 2973 |||| | ||| ||||||||| | ||||||||| Sbjct 48029 TGGTCTTAAAGGTTTCTACAACCTCAAAAAATAA 48062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156029965344288