Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq2 109 8e-19 >seq2 Length=712559 Score = 109 bits (120), Expect = 8e-19 Identities = 200/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 196807 GGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTACGCATTGCTGATTCACATGGT 196866 ||||| |||||| || | || || ||||| || || |||||||||| || ||| | Sbjct 516968 GGATACGTTCCTGGGGCTGCCATTTAACATTGCCAGCTATGCATTGCTGACACATATGAT 516909 Query 196867 GGCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACAT 196926 || || ||| | | | | | ||| |||||| | ||| | || || || || ||||| Sbjct 516908 TGCCCAGCAGTGTGATCTTGAAGTGGGAGAGTTCATCTGGTCCGGTGGGGATGTACACAT 516849 Query 196927 CTACTCCAATCACATGGAACAGGTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCC 196986 |||||| || || ||||||| || || ||| || ||| |||| | || ||||| Sbjct 516848 CTACTCAAACCATGTGGAACAAGTGAAAACCCAGTTGGAGCGTGAACCATACGCATTGCC 516789 Query 196987 GACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGA 197046 | |||||| ||||| || || ||||| || || ||||| | || ||||| || || Sbjct 516788 TAAGCTGGTCATCAAGCGTAAGCCGGATTCCATTTTTGATTATACGTTTGAAGATTTTGA 516729 Query 197047 ACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCCCCGGTGGCTATTTAAG 197099 | | |||| | | ||||||| |||||||||||| | || | |||| Sbjct 516728 GTTTGAGAACTACCAGCACCATCCGGGTATTAAAGCCCCGATTGCAGTATAAG 516676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771498499237440