Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq179 264 9e-66 seq3581 241 1e-58 >seq179 Length=41763 Score = 264 bits (292), Expect = 9e-66 Identities = 1073/1661 (65%), Gaps = 55/1661 (3%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | | | || Sbjct 19227 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACG-TCAGCTT 19285 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || |||| |||| ||||| | || || |||| |||||| ||||| ||||| | Sbjct 19286 GC-TAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGC 19344 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTA 65298 |||| || || | || ||| | | ||| | | | | | |||||||| || |||||||| Sbjct 19345 CACGGTCCGCCGACAGGTCCA--ACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTA 19402 Query 65299 CAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GC 65355 | | | | |||| ||||| | | | ||| || || |||| ||| || Sbjct 19403 CTT-CTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCAC--CGTCAGC 19459 Query 65356 AATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAA 65415 | ||| | || |||| | | ||| | |||| ||||| || | | | | Sbjct 19460 CAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAG 19519 Query 65416 GTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || || ||| | || | | |||||| || | ||| || || ||| || ||||| || Sbjct 19520 GT-AC--TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGA 19576 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 |||| || || | ||| ||| ||||||| | ||| || || || || ||||| ||||| Sbjct 19577 CGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCAT 19636 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 ||||| || | | ||||| || | |||| | | | ||| | | | | Sbjct 19637 CGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGC 19696 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||| | ||||| | | || | ||| |||||| || || | | | || Sbjct 19697 CCAATCCCACAAGCCCGAA--GACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATACC 19753 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||||| || || || |||| | |||||| ||| ||||||||| | | || Sbjct 19754 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CA 19812 Query 65713 GCT-GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTG 65771 | |||||| | | || | || || |||||||| ||| || |||||||| | Sbjct 19813 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGG 19872 Query 65772 CCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 | | ||||||| ||| |||| ||| |||| ||| | || || ||||| || || Sbjct 19873 CTTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACG 19931 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 |||||||| | || || || |||| ||||| | |||||| || |||||||| Sbjct 19932 CCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAG 19991 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGT 65950 |||| || || | ||||| || || |||||||| | | || ||| | | Sbjct 19992 TTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG--GTCACCTCGTACAGCT 20049 Query 65951 TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCA 66010 || || | | || | | | || | ||||||||||||| ||||| Sbjct 20050 TC----------TGGTA--GTTGAAC---ACT-CCATCCTCCACAAACTTGGGGAGGGCC 20093 Query 66011 AGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTG 66070 | ||| || |||||||| || || | ||| || || | || ||||| | ||| ||| | Sbjct 20094 ACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAG 20153 Query 66071 CACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCA 66130 |||| || || |||| || ||||| | ||||| || || |||||| ||| || Sbjct 20154 CACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 20213 Query 66131 TCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAA 66190 |||||||||| |||| |||| ||| ||||||| || | || | ||||||| ||| Sbjct 20214 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCAC 20273 Query 66191 AGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTA 66246 || | || || | ||| || | ||||| |||| ||||| | ||||| Sbjct 20274 AGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTC----TCGTACTTCTCGTA 20329 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || ||||| || ||||| ||| | || | || || | || || | Sbjct 20330 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 20389 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || ||| | || | | ||| ||||| ||| || ||||| || | ||| || || Sbjct 20390 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 20449 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 ||||||||| ||||| || || ||| ||| ||||||| || ||||||| || ||||| Sbjct 20450 GTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAA 20509 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 ||| || | |||||| ||||| || ||||||||||||||||||||||| | || ||||| Sbjct 20510 CTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCC 20569 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 || || ||||| || ||||| || | |||||||| | || ||| || | || ||| Sbjct 20570 TCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 20629 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACAT 66605 ||| ||| || || |||||| ||| | | | |||| || || || | ||| | Sbjct 20630 GTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGTGGCGCGGATGTTGTGCATGC 20688 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 | | |||||||| |||||| ||| |||||| || || | | || | | | Sbjct 20689 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 20748 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 |||| ||||| ||||| ||| |||| ||| ||| | || || || || || | Sbjct 20749 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 20808 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | ||| |||| ||||| ||||| || |||||||||||| Sbjct 20809 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG 20849 >seq3581 Length=1496 Score = 241 bits (266), Expect = 1e-58 Identities = 592/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 384 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 443 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 444 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 503 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | || | || | || ||||| || || ||| | || ||||| || || ||| Sbjct 504 CTGACGGACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGAC 563 Query 61234 GGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 || ||||| || ||||| | | |||| ||| | |||||||||||| |||||| Sbjct 564 GGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAAGTGCCGGAGG 621 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 622 CTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGC 681 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCG 61411 | || ||||| |||||||||| ||| | ||| || | ||| | |||||||| Sbjct 682 TGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGTGCCATCG 741 Query 61412 AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC--AGTA 61468 ||||||| ||| ||| || ||| || ||||| |||| ||| | ||| || Sbjct 742 AGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTG 801 Query 61469 CAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || |||| || || ||||||| || || | || ||||| | || ||| Sbjct 802 TTTCGTCCTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTC 857 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || || | | ||||| ||| | ||||| || || || ||||| ||||||| | Sbjct 858 TCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGC 917 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTG 61644 ||| || ||| | || || |||||||||||||| || || || || | || Sbjct 918 TTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATG 977 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | ||||||| | | ||||| || ||| | ||| || ||| Sbjct 978 -TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGT 1031 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||| ||| | | ||||| || |||||| Sbjct 1032 GACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGC 1091 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || || |||| ||||| || || || || |||||||| ||| || | Sbjct 1092 ATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCA 1151 Query 61825 TTGGGT--ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| || | |||||| || ||| ||||| || || | ||||| ||||| | Sbjct 1152 CTGGGTGCATCCA--AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCT 1209 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| || || ||||| || Sbjct 1210 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544364333920