Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq789 486 6e-135 >seq789 Length=19817 Score = 486 bits (538), Expect = 6e-135 Identities = 423/516 (82%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 3115 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 3057 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3056 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 2997 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 2996 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 2937 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||| || Sbjct 2936 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATC----GC 2881 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| || ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 2880 GCAAAGC---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 2824 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 2823 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 2765 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||||| Sbjct 2764 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATAAC 2705 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 2704 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 2645 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 2644 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 2609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510332621056