Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq785 515 1e-143 >seq785 Length=16712 Score = 515 bits (570), Expect = 1e-143 Identities = 397/464 (86%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGA 139 ||||||||||||||||||||||||||| ||||| || || | ||| || || || | Sbjct 13477 CCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGC 13418 Query 140 CC----TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTA 189 || ||| | |||| || | | | || | | ||| | | | |||| | || Sbjct 13417 CCAGACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATA 13358 Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249 ||||||| ||| | || ||||||||||||||| || | | | ||||||||||||| Sbjct 13357 AGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTC 13300 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 13299 TACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 13240 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 13239 CCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGG 13180 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 13179 ACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGG 13120 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 13119 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCA 13060 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 13059 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 13016 Score = 132 bits (146), Expect = 2e-28 Identities = 88/98 (90%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 15309 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 15250 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||||||||||||||||||||||||||||||||||| Sbjct 15249 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 15212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635126350592