Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq809 515 1e-143 >seq809 Length=17036 Score = 515 bits (570), Expect = 1e-143 Identities = 397/464 (86%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGA 139 ||||||||||||||||||||||||||| ||||| || || | ||| || || || | Sbjct 13423 CCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGC 13364 Query 140 CC----TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTA 189 || ||| | |||| || | | | || | | ||| | | | |||| | || Sbjct 13363 CCAGACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATA 13304 Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249 ||||||| ||| | || ||||||||||||||| || | | | ||||||||||||| Sbjct 13303 AGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTC 13246 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 13245 TACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 13186 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 13185 CCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGG 13126 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 13125 ACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGG 13066 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 13065 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCA 13006 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 13005 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 12962 Score = 138 bits (152), Expect = 4e-30 Identities = 91/101 (90%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 15255 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 15196 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 |||||||||||||||||||||||||||||||||||||||| Sbjct 15195 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 15155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635127953088