Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2545 486 6e-135 >seq2545 Length=4473 Score = 486 bits (538), Expect = 6e-135 Identities = 423/516 (82%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 4428 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 4370 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4369 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 4310 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 4309 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 4250 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||| || Sbjct 4249 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATC----GC 4194 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| || ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 4193 GCAAAGC---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 4137 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 4136 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 4078 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||||| Sbjct 4077 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATAAC 4018 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 4017 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 3958 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 3957 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 3922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510333451776