Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq50 87.8 7e-12 seq161 86.0 3e-11 >seq50 Length=73349 Score = 87.8 bits (96), Expect = 7e-12 Identities = 145/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||||||||||||||||||||||| |||| |||| | | | || ||| |||| Sbjct 42786 ATCATCCACCGCGACCTCAAGTCGCTCAACGTGCTGCTCGACAACCGGCTGCGTGCGAAG 42845 Query 222526 GTGGCCGACTTTGGGTTC--GCGCG-GATCAAGGAAACCAACGCCACCATGAC--ACGGT 222580 | |||||||||| || |||| | | || || ||| ||| ||||| |||| Sbjct 42846 CTCAGCGACTTTGGGCTCAGCCGCGAGCGCTCGG---CCGACGACACGATGACCAACGGC 42902 Query 222581 G-CGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639 | ||||||| || |||||||| ||||||||| | | ||| ||||| ||||||| Sbjct 42903 GTGGGCACGCTGTTGTGGACGGCGCCCGAGATCCTGCGCGGCGAGACCTACAGCGAGAAG 42962 Query 222640 GCCGACGTCTACTCGTTCGGCATC 222663 || ||||| ||||||| || |||| Sbjct 42963 GCGGACGTGTACTCGTACGCCATC 42986 >seq161 Length=49449 Score = 86.0 bits (94), Expect = 3e-11 Identities = 125/173 (72%), Gaps = 13/173 (8%) Strand=Plus/Plus Query 122209 CATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAGGAGAACGTC---ACCATGAC 122265 ||| ||| || | ||||||||| | |||| | |||||| | ||| |||||||| Sbjct 6174 CATTAAGTTGTCAGACTTTGGCCTGGCCCGCGTCAAGGCTCA---CGTGCAGACCATGAC 6230 Query 122266 CCGCGCC---GGCACGCCGTGC--TGGATGGCGCCCGAGATCATGCGAAACGAGAAGCAC 122320 || | |||||| || | ||||||||||||||| | || | ||| ||||| || Sbjct 6231 GGGCAACTGCGGCACG--GTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTAC 6288 Query 122321 GACGAGAAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCAC 122373 ||||||| ||||||| |||||| || |||||| |||| |||||||||| Sbjct 6289 ACGGAGAAGGCTGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCAC 6341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084618642137988