Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1217 508 2e-141 >seq1217 Length=21341 Score = 508 bits (562), Expect = 2e-141 Identities = 393/460 (85%), Gaps = 13/460 (3%) Strand=Plus/Minus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC-GCGAAGGACC-- 141 ||||||||||||||||||||||| ||||| || || | ||| || || || | || Sbjct 17864 CCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCGCCCGAGCAAAAGCCCAG 17805 Query 142 --TTAACGCCAGAAAA-TG-GTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGTa 193 ||| | |||| || | | | || | | ||| | | | |||| | |||||| Sbjct 17804 ACTTACATCTAGAACTGTGCGACCGCGAGGCCTCACAGATGCTACATCATGGTATAAGTA 17745 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| ||| | || ||||||||||||||| || | | | ||||||||||||||||| Sbjct 17744 AAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCTACA 17687 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 17686 CCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 17627 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 17626 GCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAG 17567 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 17566 TGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTAC 17507 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 17506 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTT 17447 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| ||||||| Sbjct 17446 GACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 17407 Score = 132 bits (146), Expect = 2e-28 Identities = 88/98 (90%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 19700 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 19641 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||||||||||||||||||||||||||||||||||| Sbjct 19640 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 19603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635125761920