Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1217 486 6e-135 >seq1217 Length=21341 Score = 486 bits (538), Expect = 6e-135 Identities = 423/516 (82%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 4420 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 4362 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4361 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 4302 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 4301 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 4242 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||| || Sbjct 4241 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATC----GC 4186 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| || ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 4185 GCAAAGC---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 4129 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 4128 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 4070 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||||| Sbjct 4069 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATAAC 4010 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 4009 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 3950 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 3949 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 3914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510331427840