Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4231 309 5e-82 seq2273 89.7 8e-16 >seq4231 Length=1148 Score = 309 bits (342), Expect = 5e-82 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 206 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 205 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACGAACCTACCAAAA 146 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 145 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 86 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 26 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 25 TCAATCTGTC 16 >seq2273 Length=2809 Score = 89.7 bits (98), Expect = 8e-16 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796763674386