Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq983 109 8e-22 seq2849 102 1e-19 seq3363 93.3 6e-17 >seq983 Length=9866 Score = 109 bits (120), Expect = 8e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACT 60 Query 226 TCC 228 ||| Sbjct 61 TCC 63 >seq2849 Length=2009 Score = 102 bits (112), Expect = 1e-19 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||||| |||||||||||| | ||| Sbjct 81 GTACAAAGGGCAGGGACGTAATCAACGCAAGC-TGATGACTTGCGCTTACTAGGGA-TTC 24 Query 61 CTCGTTGAAGACCAACAATTGCA 83 |||||||||||| | ||||||| Sbjct 23 CTCGTTGAAGACTGAAAATTGCA 1 >seq3363 Length=1573 Score = 93.3 bits (102), Expect = 6e-17 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || ||| |||||||| ||| |||||||||| ||| Sbjct 81 GTACAAAGGGCAGGGACGTAATCAATGCAAGC-TGATGACTTGCGTTTACTAGGAA-TTC 24 Query 61 CTCGTTGAAGACCAACAATTGCA 83 |||||| ||||| | ||||||| Sbjct 23 CTCGTTCAAGACTGAAAATTGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751966306875