Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2849 710 0.0 seq1475 210 9e-52 seq3363 181 4e-43 >seq2849 Length=2009 Score = 710 bits (786), Expect = 0.0 Identities = 560/663 (84%), Gaps = 10/663 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| | Sbjct 992 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTGTAC 1051 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1052 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1111 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1112 TGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCATTC 1171 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 |||||||||| | |||| || ||||| ||| ||||||||||||| | | Sbjct 1172 ATGACCAGACTTGGGCTTGGTTGAACATCCGGCGTTCTC-GCCGGTGCACTCTGC-CAGC 1229 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 ||||||||||||||| | | | | ||| |||||| |||||||||||| |||| |||| Sbjct 1230 TCAGGCCAGCATCAGTTTGCCCCGGGGGACAAAGGCGGCGGGAATGTGGCTCCCTACGGG 1289 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | ||||||||||||| ||| ||||| | | ||||||||||| |||||| |||| | Sbjct 1290 GAGTGTTATAGCCCGTCGTGTAATGC-CCTGGGGTGGACTGAGGTTCGCGCTTCGGCACG 1348 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||||||||||| | | | ||||||||| |||||||||||||||||| | | Sbjct 1349 GATGCTGGCGTAATGGTCATCAATGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCTT 1407 Query 442 C-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 | |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| || Sbjct 1408 CGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGTAGGTGAGA- 1466 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 | || ||| || |||||||||||||||| |||||||||||||||||||||||| Sbjct 1467 ---GCTTCGGCGCATCACCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCAT 1523 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 1524 ACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACT 1583 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| Sbjct 1584 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGGG 1643 Query 681 CGA 683 ||| Sbjct 1644 CGA 1646 >seq1475 Length=5367 Score = 210 bits (232), Expect = 9e-52 Identities = 153/176 (87%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||||||||||| ||| | ||||| || ||||||||| ||||| | |||| Sbjct 43 GCACTATCGACCGATCATGA-GCCTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTT 101 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 102 GGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGG 161 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 162 AAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 217 >seq3363 Length=1573 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 1308 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 1367 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 1368 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 1427 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 1428 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079900793750