Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq983 300 3e-79 >seq983 Length=9866 Score = 300 bits (332), Expect = 3e-79 Identities = 214/245 (87%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 21 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 80 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACT 60 Query 81 TCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACCATAGT 133 ||| |||| | || | |||| ||||||||||||||| | | | ||||| || || Sbjct 61 TCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACGAACCTACCAAAAATGGT 120 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || |||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 121 AAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 180 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 181 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 240 Query 254 CTGTC 258 ||||| Sbjct 241 CTGTC 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796764299625