Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1472 475 6e-132 >seq1472 Length=5389 Score = 475 bits (526), Expect = 6e-132 Identities = 283/295 (96%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 3625 TACTAAGCTGAATTACCATTGCGGCGA-GTTCATCAGTAGGGTAAAACTAACCTGTCTCA 3683 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3684 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3743 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3744 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 3803 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3804 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 3863 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 | || |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3864 CGAACGTCGAGGACCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 3918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854360484000