Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1472 140 4e-31 seq983 82.4 9e-14 >seq1472 Length=5389 Score = 140 bits (154), Expect = 4e-31 Identities = 149/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| Sbjct 354 CTATAAACCAACAAAATAGAACCGCGCGTCCTATTTTATTATTCCATGCTAATGTATTCG 413 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| ||||| |||||| |||| | || Sbjct 414 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAATGTCCTGTTTCCCCGCCA 473 Query 126 C-ACCAATGAAGGCATACGGGCT--CACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 | ||| |||||| || ||| | ||| || | ||| | || |||| | ||| Sbjct 474 CGCCCAGTGAAGG-GTATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGC 532 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 533 GGTGAGGCGGACC 545 >seq983 Length=9866 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCC-TATTCTATTATTCCATGCTAATGTATTC---- 64 ||||||||||||||| || | || ||| ||||||||||||||||||||||| Sbjct 638 AAACCAACAAAATAGACCACCAAGGCCGTATCTTATTATTCCATGCTAATGTATTCAAAT 697 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 698 GAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595173332250