Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq983 129 1e-27 seq2849 104 4e-20 seq3363 91.5 3e-16 >seq983 Length=9866 Score = 129 bits (142), Expect = 1e-27 Identities = 87/97 (90%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 97 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 38 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 ||||||||||||||||||||||||||||||||||||| Sbjct 37 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 1 >seq2849 Length=2009 Score = 104 bits (114), Expect = 4e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | ||||||||||||||| |||||||||||| ||||||||| ||||||| Sbjct 1 TGCAATTTTCAGTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGA 60 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 61 TTACGTCCCTGCCCTTTGTA 80 >seq3363 Length=1573 Score = 91.5 bits (100), Expect = 3e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 1 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 60 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 61 TTACGTCCCTGCCCTTTGTA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947156192000