Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933345.1_202017-01-04] 4,625 sequences; 39,143,447 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1472 738 0.0 seq983 224 3e-56 >seq1472 Length=5389 Score = 738 bits (818), Expect = 0.0 Identities = 467/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct 681 GTTCTCATTCCAATTACAAGGCCCGAAAGGACCCTGTATCAGTATTTATTGTCACTACCT 740 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 741 CCCCGAGTCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 800 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||||||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 801 TCTAAGGCTCCCTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 860 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 861 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 920 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| |||||||||| |||||| |||||||||||| |||||||||||||| ||||| Sbjct 921 CAAGGCCGTGCGATTCGTATAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 980 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 TTTGTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 1040 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||| ||||||||||||||||||||| || |||||| Sbjct 1041 AATTACCACGGTTATCCAAGTAGTAAGGCACTATCAAATAAACGATAACTTATATAATGA 1100 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1101 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1159 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1160 AGACAAGCATATGACTACTGGCAG 1183 >seq983 Length=9866 Score = 224 bits (248), Expect = 3e-56 Identities = 182/218 (83%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCAT 347 || ||||||| ||||||||||| | ||| |||| ||| ||| || |||| Sbjct 9376 GCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCAT 9434 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||| Sbjct 9435 GTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATA 9494 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCA 466 |||||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||| Sbjct 9495 ACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCA 9554 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||||||||||||| Sbjct 9555 TGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 9592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510330144000