Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1888 437 2e-120 >seq1888 Length=3642 Score = 437 bits (484), Expect = 2e-120 Identities = 286/314 (91%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || ||| |||||||||||| ||| |||||| Sbjct 94 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATACCCTTCACTGGGCGTGGCGGGGA 153 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||| ||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 154 AACAGGACATTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 213 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 214 TAGCATGGAATAATAAAATAGGACGCGCGGTTCTATTTTGTTGGTTTATAGGACCGCCGT 273 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 274 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAAATGTCAGAGGTGAAATTCTTGG 333 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || |||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 334 ATCATTTGAAGACTAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGA 392 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 393 ACGAAAGTTAGGGG 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915157296768