Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1977 125 2e-26 >seq1977 Length=3411 Score = 125 bits (138), Expect = 2e-26 Identities = 196/275 (71%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||| |||| |||||| ||| ||||||||||||||| | |||||||| |||| Sbjct 2501 CTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCG 2442 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| |||||| |||| | | | | ||| | | ||||| |||| |||||||||||||| | Sbjct 2441 TTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTAGCTACCTTAGGACCCT 2382 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT---CAAGAGCTTCGCGT-TAGCTAAC 186 | |||| ||||||| || ||||||| ||| | || || | || || ||| Sbjct 2381 CA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATTAGATAATAGTATACCTAGT 2323 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTG 245 || |||||| ||||||| |||||| |||||| ||||| | | ||| | Sbjct 2322 TGTCTCTGTTAACCAGCCGGCACTGGGCAGATCTCACACTTTATACTTAGATTTTTAATC 2263 Query 246 TTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| ||| ||||||||||||| | |||||||||| Sbjct 2262 TTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 2228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260741171072