Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933395.1_202017-01-04] 4,666 sequences; 39,265,443 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1888 316 3e-84 seq3167 100 5e-19 >seq1888 Length=3642 Score = 316 bits (350), Expect = 3e-84 Identities = 229/264 (87%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 ACTCGCTGACCCCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 854 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-- 117 |||||||||||||| ||||||| |||| | || | |||| ||||||||||||||| | Sbjct 853 CCTGTTATTGCCTCCAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCA 794 Query 118 ---AGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 | | ||||| || || || |||||||||| | ||||||||||||||| || Sbjct 793 CGAACCTACCAAAAATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACG 734 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 674 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| Sbjct 673 TCAAGAAAGAGCTCTCAATCTGTC 650 >seq3167 Length=1716 Score = 100 bits (110), Expect = 5e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796763983146